Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1521 111 2e-19 seq2869 87.8 2e-12 >seq1521 Length=375746 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 ||||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||| | Sbjct 339022 CCAAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATGA 338963 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 | | || ||| | | |||| | ||||| | | |||||| || | ||| || | Sbjct 338962 AGTGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACCT 338903 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | ||||| ||||| ||||| || || || || || ||||| | ||| || ||| ||| | Sbjct 338902 CCTCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTACT 338843 Query 48703 GGATTGGGAAAATAACAAA 48721 |||||||||| | ||||| Sbjct 338842 GGATTGGGAAGACTACAAA 338824 >seq2869 Length=866877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 77356 ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATG 77415 |||| | || ||||||||||| || || ||| || | |||||| || || || || | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 77416 CTCCGTAATAAATTGTTTCGAAAATCT-TCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || | || ||||| || || || || | | | || ||| | ||||| || ||| ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGC-TGTGCCTCCTCACTTTCA 628811 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | || || ||||| || || | ||||| || || || ||||| ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 77535 CTATGTCTCTTATTGGA 77551 ||||||||| |||| || Sbjct 628872 CTATGTCTCATATTAGA 628888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694602294145760