Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1521 109 8e-19 seq2869 89.7 7e-13 >seq1521 Length=375746 Score = 109 bits (120), Expect = 8e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 |||||| ||||| || ||||||||||| ||||||||||| || | ||||| ||| || Sbjct 339021 CAAATTTTCATTGACGATTCCATCACTGGCAGCAAAAAAAGCAAGAACATGGGAAATGAA 338962 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | || ||| ||| |||| | ||||| | | |||||| || | ||| || || Sbjct 338961 GTGTTGTTCCTCGTCCTTCAGAGCTTCCCAGTGACCCAGATCTTTGGAGAGATCGACCTC 338902 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||||| ||||||||||| || || || || || ||||| | ||| || ||| | || || Sbjct 338901 CTCAGCAGTCCAGAATGAGGCTTCAGCCTTCTTGTACATTTGCCAGATGTCATGGTACTG 338842 Query 47193 GATCGGAAAAATAACAAA 47210 ||| || || | ||||| Sbjct 338841 GATTGGGAAGACTACAAA 338824 Score = 91.5 bits (100), Expect = 2e-13 Identities = 153/221 (69%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | || ||| || || ||||| ||||| | ||| ||||| || Sbjct 339853 TCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCTTC 339794 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || || || || |||| ||||| || || || || || || || || Sbjct 339793 AGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGGCC 339734 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830 || | ||||||||| | || || | | | |||||| | ||||| || ||| Sbjct 339733 ACTACTCTCTCTCCAAAGTCAGCTTCCTGGTCACCGATCCACTTAATGGCCCAGTCTGCC 339674 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 || || || ||||| |||| || || || ||||| ||||| Sbjct 339673 TTCTTTTTGACACATGGCAAGGTCTCAATGGCATTGAAGAG 339633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| || ||||| ||||| || ||| |||||||| || || ||||| |||||||| Sbjct 340308 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAGTTTGCAGTTCATCCCTATGAGG 340249 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC 46568 || || ||||| ||||| ||||| ||||||||||| |||| ||||| Sbjct 340248 TTACAAGGCAGAGCTTCCGTCAGAAATTCTTGTTCAATCTTGACGGCATC 340199 >seq2869 Length=866877 Score = 89.7 bits (98), Expect = 7e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 75951 ATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACG 76010 |||| | || ||||| |||| ||| ||| ||| || | ||| || || |||||||| | Sbjct 628693 ATCCTTGGTAGGTTTCATAAGGCCCATCCCGTTCTGCCAATTCACAGCTTGCCTCTAAAG 628752 Query 76011 CACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATCA 76069 | | || ||||| || || || || | || || |||| || | || || ||| ||| Sbjct 628753 CTGCATAGTAAATGGTCTCAAAGATTTGTTTGTTTAAGAGCT-GTGCCTCCTCACTTTCA 628811 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 || ||||| | || || || || || || || ||||| || || || ||||| ||| Sbjct 628812 AATGGATACCTCATCAGGATGAAGGCGTCCGCCAGACCCTGTACACCTATTCCAATTGGT 628871 Query 76130 CTATGTCTCTTATTGGAAATTTCAGC 76155 ||||||||| |||| || | ||||| Sbjct 628872 CTATGTCTCATATTAGACCTCTCAGC 628897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712866145442880