Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1383 122 2e-22 >seq1383 Length=1214666 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || || || || |||||||| || | | ||| | |||||||| Sbjct 711950 GACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 712009 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||||||||||||| | |||||||| || | | |||||||| || || || Sbjct 712010 CAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTG 712069 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | |||| || |||||||||||| ||||| || || Sbjct 712070 GATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGGCTCTACTTCAAGTGTAATGGTCTT 712129 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||| ||||| || |||| |||||| Sbjct 712130 GCCAGTGAGGGTCTTGACAAAGATCTGCAT 712159 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || ||||| || |||||||| |||| | ||| | |||||||| Sbjct 711273 GACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCTTC 711332 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | |||||||| || | | |||||||| || || || Sbjct 711333 CAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTG 711392 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| | || | | ||||||| ||| ||||| || || || ||||| Sbjct 711393 GATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTT 711452 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || |||| ||||| Sbjct 711453 GCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || || || || |||||||| || | | || | |||||||| Sbjct 711045 GACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGACCATCTTC 711104 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | |||||||| || | | |||||||| || || || Sbjct 711105 CAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTG 711164 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||||| | || | | ||||||| ||| ||||| || || || ||||| Sbjct 711165 GATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTT 711224 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || |||| ||||| Sbjct 711225 GCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || || || || |||||||| || | | ||| | |||||||| Sbjct 711722 GACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTC 711781 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||| ||| ||||||||||| | |||||||| || | | |||||||| || || || Sbjct 711782 TAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTG 711841 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || ||||| | || | | ||||||| ||| ||||| || || || ||||| Sbjct 711842 GATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTT 711901 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || |||| ||||| Sbjct 711902 GCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | |||||| || || || || || |||||||| || | | ||| | |||||||| Sbjct 711501 GACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCATCTTC 711560 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| | |||||||| || | | |||||||| || || || Sbjct 711561 CAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTG 711620 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | ||||||| ||| ||||| || || || ||||| Sbjct 711621 GATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTGATGGTTTT 711680 Query 152075 GCCCGT 152080 ||| || Sbjct 711681 GCCAGT 711686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153707574483189