Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1383 104 2e-17 >seq1383 Length=1214666 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||||||| |||| ||||||||||| || ||||| ||| ||| Sbjct 711482 ATGCAAATCTTTGTCAAAACGCTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711423 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || || ||||||||||| ||||| ||||| Sbjct 711422 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711363 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | || || ||||| |||||||| | ||| | |||| || || Sbjct 711362 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACTCTCTCCGACTACAAC 711303 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || ||||| || ||||||||| | || || Sbjct 711302 ATTCAGAAAGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGG 711256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| |||| ||||||||||| || ||||| ||| ||| Sbjct 711254 ATGCAAATCTTTGTCAAAACACTGACTGGCAAAACCATCACACTGGAAGTGGAGCCCTCA 711195 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| || || ||||||||||| ||||| ||||| Sbjct 711194 GACACCATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 711135 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || | || | || || ||||| |||||||| || | ||| | | || || | Sbjct 711134 CAGAGATTGATCTTCGCCGGTAAACAGCTGGAAGATGGTCGCACACTCT--CTGACTACA 711077 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAA 111333 | || || || ||||| || || ||||| || ||||||||| | || || ||| || Sbjct 711076 ACATTCAGAAGGAATCCACCCTCCATTTGGTCTTGCGTCTGAGAGGAGGAAATTAA 711021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421771826428984