Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1521 93.3 4e-14 >seq1521 Length=375746 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23194 TTATCACTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTT 23253 |||| | |||||| || |||||||| || |||||||| ||||| |||| || |||||| Sbjct 340569 TTATTTCCATTCATGACGCCCATTTTCTGGTATTCCCCGACACGCTTTTCAAAGAAATTT 340510 Query 23254 GTCTTACCCTCTAATGATATATTTTCCATAAAATCAAATGGATT 23297 ||||| || || || ||||| | ||||||||| ||||| || || Sbjct 340509 GTCTTTCCTTCCAAGGATATGTGTTCCATAAAGTCAAAAGGGTT 340466 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| |||||| || || | |||||||| | |||||| || || Sbjct 339853 TCATCTCTACTAATCAGCTCATTACTGAAGGTAAGCCCTGGCATGATTCCTCGCTTCTTC 339794 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || || |||||||| ||| ||||| |||||||| || || ||||||||| Sbjct 339793 AGCCAGAAGATGGCAGCAAAGCTTCCACTGAAGAAGATACCCTCCACTGCAGCAAAGGCC 339734 Query 23653 AC 23654 || Sbjct 339733 AC 339732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521438074042600