Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1383 140 2e-28 >seq1383 Length=1214666 Score = 140 bits (154), Expect = 2e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | ||| |||| || || ||| ||||| || |||||||| Sbjct 711926 TTGCATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTA 711985 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || |||| ||| |||||||| |||||||| | ||||||||| Sbjct 711986 GTCAGAGAGAGTGCGGCCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATC 712045 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || ||| ||||| ||| | || | |||||||| | || Sbjct 712046 TGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCCGAGGG 712105 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 || || || | ||||| ||||| || ||||||||||| || ||||| |||||||| Sbjct 712106 CTCTACTTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGAT 712162 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| |||||||| | ||| |||| || || ||| ||||| || |||||||| || | Sbjct 711026 TTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 711085 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 |||| ||| | || |||||||| || ||||| |||||||| | ||||||||||| | Sbjct 711086 AGAGTGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 711145 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | | ||||| || ||| ||||| || | || | |||||||| | || |||| Sbjct 711146 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCA 711205 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || || || || || || || || || ||||||||||| Sbjct 711206 CTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 125 bits (138), Expect = 5e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | ||| |||| || || ||| || || || |||||||| Sbjct 711249 TTGCATACCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTA 711308 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||| ||| | || |||||||| || ||||| |||||||| | ||||||||| Sbjct 711309 GTCGGAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATC 711368 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || ||| ||||| ||| | || | |||||||| | || Sbjct 711369 TGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGG 711428 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| |||| || || || || || || || || || || ||||||||||| Sbjct 711429 CTCCACTTCCAGTGTGATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | ||| |||| || || ||| ||||| || |||||||| || Sbjct 711701 CATTCCTCCTCTCAGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 711760 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || || ||||| || ||||| |||||||| | ||||||||||| Sbjct 711761 AGAGAGAGTGCGGCCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGG 711820 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||| | || | |||||||| | || || Sbjct 711821 GGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTC 711880 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| || || || || || || || || || || ||||||||||| Sbjct 711881 CACTTCCAGTGTGATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||||||| | ||| |||| ||||| ||| ||||| || |||||||| Sbjct 711477 TTGCATACCTCCTCTCAGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTA 711536 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || |||||||| || ||||| |||||||| | ||||||||| Sbjct 711537 GTCAGAGAGAGTGCGACCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATC 711596 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||| || ||| ||||| ||| | || | |||||||| | || Sbjct 711597 TGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGG 711656 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| |||| || || || || || || Sbjct 711657 CTCCACTTCCAGTGTGATGGTTTTGCCAGT 711686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359956797033603