Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20gigas_20[refseq_20GCF_5F000297895.1_202012-09-19] 7,659 sequences; 557,735,934 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1383 104 2e-17 >seq1383 Length=1214666 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| ||| || ||| || ||||||||||| ||||||||||| ||||| Sbjct 711265 AGACGCAAGACCAAATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 711324 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || |||||||| |||| | ||| || || | ||||| | || Sbjct 711325 CCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCT 711384 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | ||||| | |||||| |||| || Sbjct 711385 TTGTCC-TGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGT 711443 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||||||| || || || || ||||| Sbjct 711444 GATGGTTTTGCCAGTCAGCGTTTTGACAAAGATTTGCAT 711482 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| ||| || ||| |||||||||||||| ||||| ||||| ||||| Sbjct 711037 AGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGTGTGCGA 711096 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || |||||||| |||| | ||| || || | ||||| | || Sbjct 711097 CCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCT 711156 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| | |||||| |||| || Sbjct 711157 TTGTCC-TGGATCTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGT 711215 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || || || || ||||| Sbjct 711216 GATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711254 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| ||| || ||| |||||||||||||| ||||| ||||| ||||| Sbjct 711714 AGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGG 711773 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || |||||||| |||| | ||| || || | ||||| | || Sbjct 711774 CCATCTTCTAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCT 711833 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | ||| | | ||||| | |||||| |||| || Sbjct 711834 TTGTCC-TGGATCTTGGCCTTGACGTTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGT 711892 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || || || || ||||| Sbjct 711893 GATGGTTTTGCCAGTCAGTGTTTTGACAAAGATTTGCAT 711931 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| ||| || ||| |||||||||||||| ||||| ||||| ||||| Sbjct 711493 AGACGCAAGACCAAATGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGA 711552 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| || |||||||| |||| | ||| || || | ||||| | || Sbjct 711553 CCATCTTCCAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCT 711612 Query 41765 TTGTCCATGATTTT 41778 |||||| ||| || Sbjct 711613 TTGTCCTGGATCTT 711626 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| || |||| ||| || ||| |||||||||||||| ||||| ||||| ||||| Sbjct 711942 AGACGCAAGACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGG 712001 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| || |||||||| |||| | ||| || || | ||||| | || Sbjct 712002 CCATCTTCCAACTGTTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCT 712061 Query 41765 TTGTCCATGATTTT 41778 |||||| ||| || Sbjct 712062 TTGTCCTGGATCTT 712075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462259740170800