Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq203 100 6e-16 seq181 100 6e-16 seq146 100 6e-16 seq149 98.7 2e-15 seq142 98.7 2e-15 seq60 98.7 2e-15 seq45 98.7 2e-15 seq42 98.7 2e-15 seq16 98.7 2e-15 seq7 98.7 2e-15 seq232 96.9 7e-15 >seq203 Length=1154801 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 562339 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 562398 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 562399 CCCCACGTTGGGC 562411 >seq181 Length=2281237 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 390931 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 390990 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 390991 CCCCACGTTGGGC 391003 >seq146 Length=3696092 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 1451036 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 1451095 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1451096 CCCCACGTTGGGC 1451108 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1206899 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1206958 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1206959 CCCACGTTGGGC 1206970 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1207772 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1207831 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1207832 CCCACGTTGGGC 1207843 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1208646 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1208705 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1208706 CCCACGTTGGGC 1208717 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1209534 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1209593 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1209594 CCCACGTTGGGC 1209605 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1210394 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1210453 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1210454 CCCACGTTGGGC 1210465 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1211267 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1211326 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1211327 CCCACGTTGGGC 1211338 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1212155 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1212214 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1212215 CCCACGTTGGGC 1212226 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1213016 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1213075 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1213076 CCCACGTTGGGC 1213087 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1213890 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1213949 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1213950 CCCACGTTGGGC 1213961 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1214778 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1214837 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1214838 CCCACGTTGGGC 1214849 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1215639 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1215698 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1215699 CCCACGTTGGGC 1215710 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1218171 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1218230 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1218231 CCCACGTTGGGC 1218242 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1219032 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1219091 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1219092 CCCACGTTGGGC 1219103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 3247358 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3247299 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3247298 CCCACGTTGGGC 3247287 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 3248018 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3247959 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3247958 CCCACGTTGGGC 3247947 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | ||||||| |||||||| Sbjct 1206012 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGTGTTCGAGC 1206071 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1206072 CCCACGTTGGGC 1206083 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 ||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||||| Sbjct 1216900 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCC 1216959 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 1216960 CACGTTGGGC 1216969 Score = 95.1 bits (104), Expect = 3e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165712 CCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCC 165771 ||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||||| Sbjct 1220293 CCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGCCC 1220352 Query 165772 CACGATGGGC 165781 |||| ||||| Sbjct 1220353 CACGTTGGGC 1220362 >seq149 Length=4044222 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1851068 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1851009 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1851008 CCCACGTTGGGC 1850997 >seq142 Length=4491256 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 84368 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 84309 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84308 CCCACGTTGGGC 84297 >seq60 Length=2436952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 693117 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 693058 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 693057 CCCACGTTGGGC 693046 >seq45 Length=1425844 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 73415 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 73474 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 73475 CCCACGTTGGGC 73486 >seq42 Length=1096595 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 881856 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 881797 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 881796 CCCACGTTGGGC 881785 >seq16 Length=1717003 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1101333 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1101392 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1101393 CCCACGTTGGGC 1101404 >seq7 Length=2686679 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 1179357 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1179298 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1179297 CCCACGTTGGGC 1179286 >seq232 Length=2247201 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 941798 TGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 941857 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 941858 CCCCACGTTGGGC 941870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819147893540