Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq40 91.5 2e-13 seq46 86.0 6e-12 >seq40 Length=2822076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||| |||||| | ||||| || | || |||||||| ||||| || || |||||||| || Sbjct 2221608 AACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTCCAA 2221667 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATT 15990 |||||||| |||||||| ||||||||||| Sbjct 2221668 AGATATATGCTCCATAAAGTCAAAGGGATT 2221697 >seq46 Length=1907351 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||| ||||| | ||||| || | || |||||||| ||||| || || |||||||| || Sbjct 1803330 AACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTCCAA 1803389 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATT 15990 |||||||| |||||||| ||||||||||| Sbjct 1803390 AGATATATGCTCCATAAAGTCAAAGGGATT 1803419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511412111420560