Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq190 116 3e-21 >seq190 Length=2335779 Score = 116 bits (128), Expect = 3e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 101645 GGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAG 101704 || || ||||| || | | | || ||| ||||| |||| || ||||| | |||||| Sbjct 1049630 GGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTCAGAGGTTCTATGTGGTTCACATAG 1049571 Query 101705 ATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCA 101764 | |||||||||||| | ||| |||| || || || ||| || |||| || || Sbjct 1049570 ACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATGTGGGCT 1049511 Query 101765 ATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA 101824 |||||| | || || || ||||| || || || || || ||||| || | || ||||| Sbjct 1049510 ATCATGTAGGTCAAGAGGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCGATATCC 1049451 Query 101825 GCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAAT 101884 | |||| || ||||| |||||||| || | |||| ||| || || || ||| || Sbjct 1049450 CCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCATTACACACGTAGAACTGAACAAAA 1049391 Query 101885 ACATGACAAGGCGGCAACACCATTTTA 101911 ||||||| || || | | |||| ||| Sbjct 1049390 GCATGACACGGGGGAAGCGCCATCTTA 1049364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249623815858