Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq76 132 6e-26 seq71 127 2e-24 seq46 91.5 2e-13 seq40 91.5 2e-13 >seq76 Length=1543109 Score = 132 bits (146), Expect = 6e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || ||||| || || || |||||| | ||||||||| |||||||| || |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 |||||||| |||||||||| || |||||| || |||||| ||| || || || | Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAAT 1518640 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1518641 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1518700 Query 53570 TTATTAGA 53577 | || || Sbjct 1518701 ATGTTGGA 1518708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| ||||| | ||| |||| | ||| ||||| || || || | || | Sbjct 1517873 TACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAAT 1517932 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||||| |||| ||| |||||||| ||||| || ||||| || |||| ||| || Sbjct 1517933 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAA 1517992 Query 53269 ACTATTTCT 53277 ||| ||||| Sbjct 1517993 ACTGTTTCT 1518001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAAC 54007 |||||||| |||||||| || ||| || || || || || | || |||||| Sbjct 1519820 TCAAACTCTTCTCCCCAG-CA--GTCAAAAAGCCCTGGGCACTCGTGAGGGTCCATCAAA 1519876 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | |||||| | | | || ||| || ||||| ||||| ||||||||||| ||||| Sbjct 1519877 GTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 1519936 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || | ||| | || ||| |||||||| || ||||| ||||| || || |||||| Sbjct 1519937 AACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGG 1519996 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | ||| || | |||||| || |||||||| |||| Sbjct 1519997 AAAATGTCTGCATGCCATGGCTCCAAGTAAATGG 1520030 >seq71 Length=3982359 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || ||||| || || || ||| || | ||||||||| ||||||||||| |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 |||||||| || ||||||| || |||||| || |||||| ||| || || || | Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAAT 1382480 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1382479 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1382420 Query 53570 TTATTAGA 53577 | || || Sbjct 1382419 GTGTTGGA 1382412 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || ||||| ||||||| ||| |||| | ||| ||||| ||||| || | || | Sbjct 1383204 TACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAAT 1383145 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||||| |||| ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1383144 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAA 1383085 Query 53269 ACTATTTCTAA 53279 ||| ||||||| Sbjct 1383084 ACTGTTTCTAA 1383074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAAC 54007 |||||||| |||||||| || ||| || || || || || | || |||||| Sbjct 1381343 TCAAACTCTTCTCCCCAG-CA--GTCAAAAAGCCCTGGGCACTCGTGAGGGTCCATCAAA 1381287 Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | |||||| ||| | || ||| || ||||| ||||| ||||||||||| ||||| Sbjct 1381286 GTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 1381227 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 || | ||| | || || |||||||| || ||||| ||||| || || |||||| Sbjct 1381226 AACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGG 1381167 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | ||| || | |||||| || |||| ||| |||| Sbjct 1381166 AAAATGTCTGCATGCCATGGCTCCAGGTAAATGG 1381133 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 ||||||||||| || ||||| | ||| |||||||||||||| | ||| | | || Sbjct 1379996 TGATGAATTCCCACAGCGACCCTCATCAACATGTGCTGAGGGCGCTCAGCCACTTTTCCA 1379937 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 54632 |||||| |||| |||||||| | ||||| || || || || ||||| | ||| ||||| Sbjct 1379936 TTTATTCTCAGTAAGTAGGACCTCTCCAATGTCTTGAATCCGAAATACTGGTAGCTGAAA 1379877 Query 54633 AGTCTCGTTCGTAAATAA 54650 || || || ||||||| Sbjct 1379876 --TCCCGATCATAAATAA 1379861 >seq46 Length=1907351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || |||| ||||| ||| ||||| || || || || || ||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 24277 CAATAAGTCTTTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 24333 | | | || || ||||| | || ||| || |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||| || ||||||||||| ||||| || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/118 (76%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| ||||| || |||||||| || ||||||||||| || ||||| || || || || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || ||||||| ||||| || || | ||||| ||||| |||| ||| | |||| Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGA-TCTGTAAAAT 1803443 >seq40 Length=2822076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| || |||| ||||| ||| ||||| || || || || || ||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 24277 CAATAAGTCTTTCTCCATAACCGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 24333 | | | || || ||||| | || ||| || |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||||| || ||||||||||| ||||| || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| |||||||| |||||||| || ||||||||||| || ||||| || || || || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || ||||||| ||||| || || | ||||| ||||| |||| ||| | |||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGA-TCTGTAAAAT 2221721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718943095840