Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq190 196 6e-45 >seq190 Length=2335779 Score = 196 bits (216), Expect = 6e-45 Identities = 338/485 (70%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 145534 AATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAG 145593 || || || |||| ||||||| || | ||| || | ||| |||| | | |||| Sbjct 1049744 AACTACACTGCCAAATCCATGGCTATCTTAGGGTGAGGATTGTAACCCTGAATCTCAAAA 1049685 Query 145594 TCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAG 145653 ||||| | ||||||| || |||| ||||| || |||| ||| |||| || Sbjct 1049684 TCCTCATACTTGAAGTCGTCAATGTTTTCCACTGTTCTTTTGATCACCAGCTTGGGGAAT 1049625 Query 145654 GGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713 || | ||| |||| |||||| | ||||| || || | |||||| | |||||||| Sbjct 1049624 GGTCTGGGTTTCCTCTCCAGCTGAATTTTCAGAGGTTCTATGTGGTTCACATAGACGTGA 1049565 Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773 || || |||| ||||| ||| || ||||||| ||| || |||| |||||| | |||| Sbjct 1049564 GCATCTCCCAAAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATGTGGGCTATCATG 1049505 Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833 ||||||| ||||| || ||||| || ||||| ||||||||||| || || ||||| || Sbjct 1049504 TAGGTCAAGAGGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCGATATCCCCGGAT 1049445 Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAG-GTG 145892 |||||||||||||| |||||||| || || ||||||||||| | ||| || || Sbjct 1049444 CGCTGGTACAGCTGACAGGAGAGTTCGCCATTACACACGTAGAACT-GAACAAAAGCATG 1049386 Query 145893 GCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA-GCC 145951 || || || || ||||| ||||| ||||||||||| | | || || || Sbjct 1049385 ACACGGGGGAAGCGCCATCTTATCTAGGTCACAGGGGTTCCAGGCAGACATGATGATGCG 1049326 Query 145952 TCCTGCTC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCC 146010 || | || || || || ||||||||| | || | | || | ||||||||| || Sbjct 1049325 TC--GGTCGTCCGGATTATTCTTGATCTTGTCAATGACACCTCTTAACTGGTCCACACCT 1049268 Query 146011 TGCCC 146015 || || Sbjct 1049267 TGACC 1049263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074159406320