Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq111 120 3e-22 >seq111 Length=4886044 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || || || | | ||||| ||| | ||||||||||| |||||||| ||||| Sbjct 1691218 TTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1691159 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | || || || | || ||||||||||| || ||| | || | ||||||||| || | Sbjct 1691158 GAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGG 1691099 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||| ||||| |||||| || || | | | || || |||||| Sbjct 1691098 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCT 1691039 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 1691038 ACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||| | ||| | ||||| ||||| |||||||| ||||| | Sbjct 1690306 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690247 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || |||| ||||||||||| || ||| | || | ||||||||| || || Sbjct 1690246 AGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690187 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| ||| || | | | ||| || ||| || Sbjct 1690186 GGATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690127 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||| || || | ||||||||||| ||||||||| Sbjct 1690126 CTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 118 bits (130), Expect = 9e-22 Identities = 165/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| ||| | ||||||||||| |||||||| ||||| | Sbjct 1690761 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 1690702 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || ||||||||||| || ||| | || | ||||||||| || || Sbjct 1690701 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690642 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | || || ||| ||| Sbjct 1690641 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTC-AATGTGTCTGAGGGTTCCA 1690583 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||||||||| ||||||||| Sbjct 1690582 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||| | ||| | ||||| ||||| |||||||| ||||| | Sbjct 1690989 TTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690930 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || ||||||||||| || ||| | || | ||||||||| || || Sbjct 1690929 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690870 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | ||| || ||| || Sbjct 1690869 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690810 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||||||||| ||||||||| Sbjct 1690809 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| ||| | ||||||||||| |||||||| || || | Sbjct 1690078 TTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGG 1690019 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || ||||||||||| || ||| | || | ||||||||| || || Sbjct 1690018 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689959 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | || || |||||| Sbjct 1689958 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689899 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 1689898 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| ||| | ||||| ||||| |||||||| ||||| | Sbjct 1690534 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1690475 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || ||||||||||| || ||| | || | ||||||||| || || Sbjct 1690474 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1690415 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | || || |||||| Sbjct 1690414 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1690355 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 1690354 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| ||| | ||||| ||||| |||||||| || || | Sbjct 1689850 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGG 1689791 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || ||||||||||| || ||| | || | ||||||||| || || Sbjct 1689790 AGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGG 1689731 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | || || |||||| Sbjct 1689730 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1689671 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || |||||||||||||| | ||||| ||||| ||||||||| Sbjct 1689670 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | | ||||| ||| | ||||| ||||| |||||||| ||||| | Sbjct 1689622 TTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGG 1689563 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | || ||||||||||| || ||| | || | ||||||||| || | Sbjct 1689562 AGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAG 1689503 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| ||||| |||||| || || | | | ||||| |||||| Sbjct 1689502 GGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCA 1689443 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 1689442 CCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257357630328