Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq190 132 3e-26 >seq190 Length=2335779 Score = 132 bits (146), Expect = 3e-26 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 97009 GGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAA 97068 ||||| || ||||| | | | ||||| | | |||| || ||||| |||||||| Sbjct 1049630 GGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTCAGAGGTTCTATGTGGTTCACATAG 1049571 Query 97069 ATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCG 97128 | |||||||||||| |||||||| | || || || || | | |||| ||||| Sbjct 1049570 ACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATGTGGGCT 1049511 Query 97129 ATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCA 97188 ||||| | || || || ||||| || || || || || |||||||| || || ||||| Sbjct 1049510 ATCATGTAGGTCAAGAGGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCGATATCC 1049451 Query 97189 GCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAAT 97248 | |||| || || | ||||||||| || | |||| |||||| || |||||| || Sbjct 1049450 CCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCATTACACACGTAGAACTGAACAAAA 1049391 Query 97249 ACATGACAGGGGGGCAACGCCATTTT 97274 ||||||| ||||| | |||||| || Sbjct 1049390 GCATGACACGGGGGAAGCGCCATCTT 1049365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346782486938060