Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq111 86.0 4e-12 >seq111 Length=4886044 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||||||||| || ||| | || |||| ||| || || || || Sbjct 1690952 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAA 1690893 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | | |||||| || ||| | | || ||||| ||||| ||| | || Sbjct 1690892 GATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATT 1690833 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || |||| |||||||| ||||||||||| ||||| || Sbjct 1690832 TTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGAC 1690773 Query 34378 AAAGATCTGCAT 34389 |||||| ||||| Sbjct 1690772 AAAGATTTGCAT 1690761 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| || | || ||| ||||| |||||||||||||| Sbjct 1689621 TCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 1689562 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| ||| || || || || || | | |||||| || || Sbjct 1689561 GAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGG 1689502 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||| | || | || | ||| | | || || Sbjct 1689501 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCAC 1689442 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | |||||||| ||||| ||||| |||||||||||||| ||||| |||| Sbjct 1689441 CTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATGGCTC 1689389 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| || | || ||| ||||| |||||||||||||| Sbjct 1690533 TCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 1690474 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| ||| || || || || || | | |||||| || ||| Sbjct 1690473 GAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 1690414 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||| | || | || | || | | || || Sbjct 1690413 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTAC 1690354 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 1690353 TTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070590396480