Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq46 91.5 1e-13 seq40 91.5 1e-13 >seq46 Length=1907351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || ||||| || | || |||||||| ||||| |||||||||||||| ||||| Sbjct 1804533 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 1804592 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| |||||||||| Sbjct 1804593 AACCCATAGAAACACCTAGCTTCTG 1804617 >seq40 Length=2822076 Score = 91.5 bits (100), Expect = 1e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || ||||| || | || |||||||| ||||| |||||||||||||| ||||| Sbjct 2222814 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 2222873 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| |||||||||| Sbjct 2222874 AACCCATAGAAACACCTAGCTTCTG 2222898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482343441503440