Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq111 109 4e-19 >seq111 Length=4886044 Score = 109 bits (120), Expect = 4e-19 Identities = 194/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 18051 TGTTCAATAGTTTAATaaaaaattaaaaaTACATTTTCTTT--TTGTTA---TCCTCCCC 18105 |||| || | || |||| ||| || ||||| |||||| |||||| |||||| | Sbjct 1691264 TGTTGAAAAATTCAATAGAAATTTTAAAAT----TTTCTTGAATTGTTAATTTCCTCCAC 1691209 Query 18106 GTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTT 18165 | || | | |||| || || || || || || |||||||||||||||| | ||| Sbjct 1691208 GAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGC 1691149 Query 18166 TACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTT 18225 | |||||||| ||||| || ||| |||| | ||| || ||||| ||| | |||| Sbjct 1691148 GGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTT 1691089 Query 18226 CCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 | || || || | |||||| | | ||| ||||| |||||| ||| | | Sbjct 1691088 CTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTG 1691029 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| | |||||||| | ||||| ||||| ||||||||| Sbjct 1691028 TGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | | |||| || || || ||||| || |||||||||||||||| Sbjct 1690533 TCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGA 1690474 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||| ||||| || ||| |||| | ||| || ||||| ||| Sbjct 1690473 GAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 1690414 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | |||||| | | ||| ||||| |||||| Sbjct 1690413 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTAC 1690354 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | |||||||| | ||||| ||||| ||||||||| Sbjct 1690353 TTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | | |||| || || || ||||| || ||||||||||| |||| Sbjct 1689849 TCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGA 1689790 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||| ||||| || ||| |||| | ||| || ||||| ||| Sbjct 1689789 GAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 1689730 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | |||||| | | ||| ||||| |||||| Sbjct 1689729 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTAC 1689670 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | |||||||| | ||||| ||||| ||||||||| Sbjct 1689669 TTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | | |||| || || || || || || |||||||||||||||| Sbjct 1690760 TCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 1690701 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||| ||||| || ||| |||| | ||| || ||||| ||| Sbjct 1690700 GAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 1690641 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | |||||| | | ||| ||||| ||| || Sbjct 1690640 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAA-TGTGTCTGAGGGTTCCAC 1690582 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | |||||||| | ||||| ||||||||||||||| Sbjct 1690581 TTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | | |||| || || || || || || ||||||||||| |||| Sbjct 1690077 TCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGA 1690018 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||| ||||| || ||| |||| | ||| || ||||| ||| Sbjct 1690017 GAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGG 1689958 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || || | |||||| | | ||| ||||| |||||| Sbjct 1689957 GATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTAC 1689898 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | |||||||| | ||||| ||||| ||||||||| Sbjct 1689897 TTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || |||||||||||||||| | || | |||||||| ||| Sbjct 1690963 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGT 1690904 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | ||| || ||||| ||| | ||||| || || || | Sbjct 1690903 TTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTG 1690844 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | | ||| |||||| ||| || ||| | |||||| | |||||||| Sbjct 1690843 GCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTG 1690784 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | ||||| ||||| ||||||||| Sbjct 1690783 AGGGTTTTGACAAAGATTTGCATT 1690760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342344874710