Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq71 113 4e-20 seq76 107 2e-18 >seq71 Length=3982359 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || || ||||| |||| || || || || ||||| ||||||||||||| |||||||| Sbjct 1381271 TTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCGCGGGCC 1381212 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | | ||||| || || |||||||| || | |||| || | || | ||| |||||| Sbjct 1381211 CTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGGAAAATGTCTGCATGC 1381152 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || ||||| ||||||| |||||| || || ||||||| Sbjct 1381151 CATGGCTCCAGGTAAATGGCAAAGGCACCAGGTCTCT 1381115 Score = 98.7 bits (108), Expect = 9e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 ||||||| || || |||||||| || |||||||| || || || |||| || ||||| Sbjct 1381667 TGTACTCCACGATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGT 1381608 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 | || || || || ||||||||| ||||||||||| || || |||||| ||||| Sbjct 1381607 TTGACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCG 1381548 Query 23184 ACTCGATGA 23192 ||||||||| Sbjct 1381547 ACTCGATGA 1381539 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 22176 CCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGT 22235 ||| |||||| ||||| || || || |||| |||||||| | ||| | |||| Sbjct 1384216 CCAACTTCCAGGCGTAGAAGTGCATGCTGGTCAGCTTTCCATAGTTGGGCTCCGCAATGT 1384157 Query 22236 ACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCA 22295 | || | ||||||||||| || || || ||||||||||| |||||||| || |||| Sbjct 1384156 GGATGTTAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCA 1384097 Query 22296 ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCG 22355 || | || || ||||| || ||||||||||| | | ||| ||| || ||| Sbjct 1384096 CGGTCTTCTGGGAGATCTCCCACACAGTCTTGTACAGATTGCGGATTTCTTCTGGAATCT 1384037 Query 22356 ATTCGATCCTCTG 22368 ||| || |||| Sbjct 1384036 CTTCAATATTCTG 1384024 >seq76 Length=1543109 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 ||||||| ||||| |||||||| || |||||||| || || || |||| || ||||| Sbjct 1519503 TGTACTCCACAATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGT 1519562 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 || || || || || ||||||||| ||||||||||| || || |||||| ||||| Sbjct 1519563 TGGACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCG 1519622 Query 23184 ACTCGATGA 23192 ||||||||| Sbjct 1519623 ACTCGATGA 1519631 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || || ||||| |||| || || || || ||||| ||||||||||||| |||||||| Sbjct 1519892 TTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAACAAATCGCGGGCT 1519951 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | | ||||| || || |||||||| || | |||| || | || | ||| |||||| Sbjct 1519952 CTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGGAAAATGTCTGCATGC 1520011 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || ||||| | ||||| ||| || || || || |||| Sbjct 1520012 CATGGCTCCAAGTAAATGGCGAAGGCACCAGGCCTCT 1520048 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22176 CCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGT 22235 ||| |||||| ||||| || || || |||| |||||||| | ||| | |||| Sbjct 1516875 CCAACTTCCAGGCGTAGAAGTGCATGCTTGTCAGCTTTCCATAGTTGGGCTCTGCAATGT 1516934 Query 22236 ACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCA 22295 | || | ||||||||||| || || || ||||||||||| |||||||| || |||| Sbjct 1516935 GGATGTTAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCA 1516994 Query 22296 ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCG 22355 || | || || ||||| || ||||||||||| | | ||| ||| || ||| Sbjct 1516995 CGGTCTTCTGGGAGATCTCCCACACAGTCTTGTACAGATTGCGGATTTCTTCTGGAATCT 1517054 Query 22356 ATTCGATCCTCTG 22368 ||| || |||| Sbjct 1517055 CTTCAATATTCTG 1517067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764405195360