Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq71 123 3e-23 seq76 118 1e-21 seq40 105 8e-18 seq46 104 3e-17 >seq71 Length=3982359 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || || || || || || ||| || | || |||||| ||||||||||| |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 |||||||| |||||||||| || |||||| || |||||| ||| || || || | Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAAT 1382480 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1382479 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1382420 Query 62808 TTATTAGA 62815 | || || Sbjct 1382419 GTGTTGGA 1382412 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 ||||| ||| |||||||| ||||||| ||| |||| | ||| ||||| ||||| || | Sbjct 1383211 GGTTAGTTACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGG 1383152 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 || | ||||||||||| |||| ||| |||||||| ||||| || ||||| || || | Sbjct 1383151 CCTCAATGGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTA 1383092 Query 62500 CCAATAAACTATTTCTAA 62517 ||| ||||| ||||||| Sbjct 1383091 ACAACAAACTGTTTCTAA 1383074 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || ||||||||||| ||||| || | || || || ||||| || | Sbjct 1379280 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCAAGGA 1379221 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | || || ||||| |||| || || ||||| || | || ||||||||| |||||| Sbjct 1379220 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1379161 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 | |||||||| || || || || | || | ||| |||||||| Sbjct 1379160 ACTCTACCGTGGTGACGCCGGGGTAAAGCCCATTAATCACCTTCAT 1379115 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 |||||| | |||||| ||| | || ||| || ||||| ||||| ||||||||||| || Sbjct 1381293 CATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1381234 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||| || | ||| | | || |||||||| || ||||| ||||| || || || Sbjct 1381233 AGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1381174 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||| | ||| || | |||||| || |||| ||| ||||| Sbjct 1381173 GAACTGGAAAATGTCTGCATGCCATGGCTCCAGGTAAATGGC 1381132 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 ||||||||||| || ||||| | ||| |||||||||||||| | ||| | | ||| Sbjct 1379996 TGATGAATTCCCACAGCGACCCTCATCAACATGTGCTGAGGGCGCTCAGCCACTTTTCCA 1379937 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 63870 |||||| ||| |||||||| | ||||| || || || || ||||| | ||| ||||| Sbjct 1379936 TTTATTCTCAGTAAGTAGGACCTCTCCAATGTCTTGAATCCGAAATACTGGTAGCTGAAA 1379877 Query 63871 AGTCTCGTTCGTAAATAA 63888 || || || ||||||| Sbjct 1379876 --TCCCGATCATAAATAA 1379861 >seq76 Length=1543109 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || || || || || || |||||| | || |||||| |||||||| || |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 |||||||| || ||||||| || |||||| || |||||| ||| || || || | Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAAT 1518640 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1518641 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1518700 Query 62808 TTATTAGA 62815 | || || Sbjct 1518701 ATGTTGGA 1518708 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 ||||| ||| |||||||| ||||| | ||| |||| | ||| ||||| || || || | Sbjct 1517866 GGTTAGTTACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGG 1517925 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 || | ||||||||||| |||| ||| |||||||| ||||| || ||||| || |||| Sbjct 1517926 CCTCAATGGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCA 1517985 Query 62500 CCAATAAACTATTTCT 62515 ||| ||||| ||||| Sbjct 1517986 ACAACAAACTGTTTCT 1518001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 |||||| | |||||| | | | || ||| || ||||| ||||| ||||||||||| || Sbjct 1519870 CATCAAAGTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1519929 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 ||| || | ||| | | ||| |||||||| || ||||| ||||| || || || Sbjct 1519930 AGCGTAGAACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1519989 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 |||| | ||| || | |||||| || |||||||| ||||| | | ||||||| Sbjct 1519990 GAACTGGAAAATGTCTGCATGCCATGGCTCCAAGTAAATGGCGAAGGCACCAGGCC 1520045 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || ||||||||||| ||||| || | || || || ||||| || | Sbjct 1521987 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCGAGGA 1522046 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | || || ||||| |||| || || ||||| || | || ||||||||| |||||| Sbjct 1522047 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1522106 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 | |||||||| || || || || | || | ||| |||||||| Sbjct 1522107 ACTCTACCGTGGTGACGCCGGGGTAAAGCCCATTAATCACCTTCAT 1522152 >seq40 Length=2822076 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| |||||||| |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAT 33385 ||| ||||||| ||||| || ||||| ||||| |||||||| || Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGAT 2221712 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| ||| || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| ||| || || |||||||| || || || |||||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | | ||||| ||||| | || || ||| |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 >seq46 Length=1907351 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| ||| || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||| ||| || || |||||||| || || || |||||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 33724 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33780 | | | ||||| ||||| | || || ||| |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| ||||| || |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAT 33385 ||| ||||||| ||||| || ||||| ||||| |||||||| || Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATTCTCCACATTGTAGAT 1803434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814781566240