Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq46 89.7 5e-13 seq40 89.7 5e-13 seq71 84.2 2e-11 >seq46 Length=1907351 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||| || || | ||| ||||| | ||| || || || Sbjct 1804150 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 1804209 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || |||||||| ||| ||||| || ||||||||||| ||||| || Sbjct 1804210 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 1804269 Query 11774 ACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCT 11830 || || || || ||||| | ||| || | ||||| || ||||||| || || Sbjct 1804270 ACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTGCC 1804329 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| || || || ||| || || || || || |||| Sbjct 1804330 TTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATA 1804369 >seq40 Length=2822076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||| || || | ||| ||||| | ||| || || || Sbjct 2222428 TCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCTTC 2222487 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || |||||||| ||| ||||| || ||||||||||| ||||| || Sbjct 2222488 AACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGGCC 2222547 Query 11774 ACTACTCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCT 11830 || || || || ||||| | ||| || | ||||| || ||||||| || || Sbjct 2222548 ACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTGCC 2222607 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA 11870 ||||| || || || ||| || || || || || |||| Sbjct 2222608 TTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATA 2222647 >seq71 Length=3982359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || || ||||| | ||| || |||| || |||||||| || || | |||||| Sbjct 1383203 ACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAATG 1383144 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || ||||| || ||||| || |||| | | Sbjct 1383143 GACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAAA 1383084 Query 37258 CTATTTCTCAATCCATGTGTA 37278 || ||||| | ||||||| || Sbjct 1383083 CTGTTTCTAACTCCATGTCTA 1383063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522703351520