Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq76 132 6e-26 seq71 127 3e-24 seq46 95.1 2e-14 seq40 95.1 2e-14 >seq76 Length=1543109 Score = 132 bits (146), Expect = 6e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || ||||| || || || |||||| | ||||||||| |||||||| || |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||| |||||||||| || |||||| || |||||| ||| || || || | Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAAT 1518640 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1518641 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1518700 Query 65601 TTATTAGA 65608 | || || Sbjct 1518701 ATGTTGGA 1518708 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||||| | |||||| | | | || ||| || ||||| ||||| ||||||||||| || Sbjct 1519870 CATCAAAGTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1519929 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 ||| || ||||| | || ||| |||||||| || ||||| ||||| || || || Sbjct 1519930 AGCGTAGAACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1519989 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 |||| | ||| || |||||| || |||||||| ||||| | | ||||||| Sbjct 1519990 GAACTGGAAAATGTCTGCATGCCATGGCTCCAAGTAAATGGCGAAGGCACCAGGCC 1520045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| ||||| | ||| |||| | ||| ||||| || || || | || | Sbjct 1517873 TACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAAT 1517932 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||||||||||| |||| ||| |||||||| ||||| || ||||| || |||| ||| || Sbjct 1517933 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAA 1517992 Query 65300 ACTATTTCT 65308 ||| ||||| Sbjct 1517993 ACTGTTTCT 1518001 >seq71 Length=3982359 Score = 127 bits (140), Expect = 3e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || ||||| || || || ||| || | ||||||||| ||||||||||| |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||| || ||||||| || |||||| || |||||| ||| || || || | Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAAT 1382480 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1382479 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1382420 Query 65601 TTATTAGA 65608 | || || Sbjct 1382419 GTGTTGGA 1382412 Score = 105 bits (116), Expect = 9e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || ||||| ||||||| ||| |||| | ||| ||||| ||||| || | || | Sbjct 1383204 TACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAAT 1383145 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 ||||||||||| |||| ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1383144 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAA 1383085 Query 65300 ACTATTTCTAA 65310 ||| ||||||| Sbjct 1383084 ACTGTTTCTAA 1383074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 66032 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||||| | |||||| ||| | || ||| || ||||| ||||| ||||||||||| || Sbjct 1381293 CATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1381234 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 ||| || ||||| | || || |||||||| || ||||| ||||| || || || Sbjct 1381233 AGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1381174 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 |||| | ||| || |||||| || |||| ||| ||||| Sbjct 1381173 GAACTGGAAAATGTCTGCATGCCATGGCTCCAGGTAAATGGC 1381132 >seq46 Length=1907351 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || |||| ||||| ||| ||||| || || || || || ||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 36300 CAATAAGTCTCTCTCCATAACCGGCA--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 36356 | | | ||||| ||||| | || ||| || |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||| || ||||||||||| ||||| || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 >seq40 Length=2822076 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| || |||| ||||| ||| ||||| || || || || || ||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 36300 CAATAAGTCTCTCTCCATAACCGGCA--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 36356 | | | ||||| ||||| | || ||| || |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||||| || ||||||||||| ||||| || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 |||||| |||||||| |||||||| || ||||||||||| || ||||| || || || || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATT 35946 || ||||||| ||||| || || || ||||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169854676720