Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq190 165 7e-36 >seq190 Length=2335779 Score = 165 bits (182), Expect = 7e-36 Identities = 217/298 (73%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 20905 TCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCA 20964 ||||| |||||||| ||| || || | |||||| || ||||| || || |||| Sbjct 1049614 TCCTCTCCAGCTGAATTTTCAGAGGTTCTATGTGGTTCACATAGACGTGAGCATCTCCCA 1049555 Query 20965 AGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGA 21024 | ||||| || || || || || | || || |||| ||| || |||| || |||| || Sbjct 1049554 AAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATGTGGGCTATCATGTAGGTCAAGA 1049495 Query 21025 GGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACA 21084 ||| || |||||||| || ||||| ||||| ||||| || || |||| | |||||||| Sbjct 1049494 GGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCGATATCCCCGGATCGCTGGTACA 1049435 Query 21085 GCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAA-CGTGACAAGGAGGG 21143 |||| ||||| || || || | |||||| |||||| |||||| | ||||| || || Sbjct 1049434 GCTGACAGGAGAGTTCGCCATTACACACGTAGAACTGA-ACAAAAGCATGACACGGGGGA 1049376 Query 21144 AGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGT 21201 || |||||| | ||||| ||||||||| || |||| | |||||| || |||| Sbjct 1049375 AGCGCCATCTTATCTAGGTCACAGGGGTTCCAGGCAGACATGATGATGCGTCGGTCGT 1049318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774133559840