Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq76 120 4e-22 seq71 120 4e-22 seq46 109 8e-19 seq40 109 8e-19 >seq76 Length=1543109 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 |||| ||| || || || || || || || || ||||||||||| |||||||| ||| Sbjct 1518515 CCTGGGTAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCT 1518574 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 |||| |||||||| ||||| |||| || || ||| || ||||| ||| || || Sbjct 1518575 GCGTAGTAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAG 1518634 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || | | | |||||||| ||||| || | ||| ||||| |||||||||||||| | | Sbjct 1518635 GGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGA 1518694 Query 79474 TGTCTCTTATTAGA 79487 |||||| | || || Sbjct 1518695 TGTCTCATGTTGGA 1518708 Score = 100 bits (110), Expect = 4e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAAT---CCAGGACATTCGTCAGGACACATCAAC 79917 || ||||| |||||||| || ||| || || || || |||| ||| |||||| Sbjct 1519820 TCAAACTCTTCTCCCCAG-CA--GTCAAAAAGCCCTGGGCACTCGTGAGGGTCCATCAAA 1519876 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | |||||| ||| | || || || ||||| ||||| ||||||||||| ||||| Sbjct 1519877 GTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 1519936 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || | ||| | || ||| || ||||| || ||||| ||||| || || |||||| Sbjct 1519937 AACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGG 1519996 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 | ||| || | |||||| || |||||||| ||||| Sbjct 1519997 AAAATGTCTGCATGCCATGGCTCCAAGTAAATGGC 1520031 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| | | Sbjct 1521987 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCGAGGA 1522046 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | || || || || |||| || || ||||| || | || ||||||||| |||||| Sbjct 1522047 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1522106 Query 80798 ATTCTACCGTTGTTACTCC 80816 | |||||||| || || || Sbjct 1522107 ACTCTACCGTGGTGACGCC 1522125 >seq71 Length=3982359 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 |||| ||| || || || || || || ||||| ||||||||||| ||||||||||| Sbjct 1382605 CCTGGGTAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCC 1382546 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 |||| |||||||| || || |||| || || ||| || ||||| ||| || || Sbjct 1382545 GCGTAGTAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAG 1382486 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || | | | |||||||| ||||| || | ||| ||||| |||||||||||||| | | Sbjct 1382485 GGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGA 1382426 Query 79474 TGTCTCTTATTAGA 79487 |||||| | || || Sbjct 1382425 TGTCTCGTGTTGGA 1382412 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAAT---CCAGGACATTCGTCAGGACACATCAAC 79917 || ||||| |||||||| || ||| || || || || |||| ||| |||||| Sbjct 1381343 TCAAACTCTTCTCCCCAG-CA--GTCAAAAAGCCCTGGGCACTCGTGAGGGTCCATCAAA 1381287 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | |||||| | | | || || || ||||| ||||| ||||||||||| ||||| Sbjct 1381286 GTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 1381227 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || | ||| | || || || ||||| || ||||| ||||| || || |||||| Sbjct 1381226 AACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGG 1381167 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 | ||| || | |||||| || |||| ||| ||||| Sbjct 1381166 AAAATGTCTGCATGCCATGGCTCCAGGTAAATGGC 1381132 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| | | Sbjct 1379280 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCAAGGA 1379221 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | || || || || |||| || || ||||| || | || ||||||||| |||||| Sbjct 1379220 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1379161 Query 80798 ATTCTACCGTTGTTACTCC 80816 | |||||||| || || || Sbjct 1379160 ACTCTACCGTGGTGACGCC 1379142 >seq46 Length=1907351 Score = 109 bits (120), Expect = 8e-19 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| || || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| |||| |||||||| || || || || ||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 50102 CAACAAGTCTCTCTCCATAACTGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | ||||| ||||| || ||| || |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| ||||| || |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||| ||||||| ||||| || ||||| ||||| Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 >seq40 Length=2822076 Score = 109 bits (120), Expect = 8e-19 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| || || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| || |||| ||||| |||| |||||||| || || || || ||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 50102 CAACAAGTCTCTCTCCATAACTGGCG--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | ||||| ||||| || ||| || |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| |||||||| |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||| ||||||| ||||| || ||||| ||||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265585747120