Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq46 91.5 1e-13 seq40 86.0 6e-12 >seq46 Length=1907351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 ||||||||||| || |||||||| || ||||||||||| | | | ||| |||| Sbjct 1804779 TTTTCATTAACAATTCCATCACTGGCAGCAAAAAATGCAAGGACATGGGAAATGAAGTGG 1804838 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-AAATCCTTAGAAAGATCTACTTCATC 14380 | ||| ||| ||||| ||| ||| | | || | ||| || || ||||| || || || Sbjct 1804839 CGTTCTCCATCCTTGAGGGTTTCCCAGT-GAATCAGATCTTTGGAGAGATCAACCTCCTC 1804897 Query 14381 AACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14440 | | ||||| ||| ||| ||||||| || ||||| ||| || || | || || Sbjct 1804898 AGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGGAT 1804957 Query 14441 AGGAAAAACTACAAATC-TCGAAGAT 14465 |||||| |||||||| | |||| ||| Sbjct 1804958 AGGAAAGACTACAAAGCGTCGAGGAT 1804983 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| || | || |||||||| ||||| |||||||||||||| ||||| Sbjct 1804533 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 1804592 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || |||||||| Sbjct 1804593 AACCCATAGAAACACCTAGCTTC 1804615 >seq40 Length=2822076 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 14262 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14321 ||||||||||| || |||||||| || |||||||| || | | | ||| |||| Sbjct 2223060 TTTTCATTAACAATTCCATCACTGGCAGCAAAAAAGGCAAGGACATGGGAAATGAAGTGG 2223119 Query 14322 TGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-AAATCCTTAGAAAGATCTACTTCATC 14380 | ||| ||| ||||| ||| ||| | | || | ||| || || ||||| || || || Sbjct 2223120 CGTTCTCCATCCTTGAGGGTTTCCCAGT-GAATCAGATCTTTGGAGAGATCAACCTCCTC 2223178 Query 14381 AACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATAT 14440 | | ||||| ||| ||| ||||||| || ||||| ||| || || | || || Sbjct 2223179 AGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGGAT 2223238 Query 14441 AGGAAAAACTACAAATC-TCGAAGAT 14465 |||||| |||||||| | |||| ||| Sbjct 2223239 AGGAAAGACTACAAAGCGTCGAGGAT 2223264 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| || | || |||||||| ||||| |||||||||||||| ||||| Sbjct 2222814 ATGTAGGTGTCAATTAGCAGACTGTACATTTCTGAGTGGATGTTTTCCATAGCAATCTGG 2222873 Query 14202 AAACCATAAAAGCATCTAGCTTC 14224 || ||||| || || |||||||| Sbjct 2222874 AACCCATAGAAACACCTAGCTTC 2222896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725853217200