Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq46 93.3 4e-14 seq40 89.7 5e-13 >seq46 Length=1907351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||| ||||||||||||||| |||||||| || ||||||||||| | | | ||| | Sbjct 1804774 CCAGGTTTTCATTAACAATTCCATCACTGGCAGCAAAAAATGCAAGGACATGGGAAATGA 1804833 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| | ||| ||| ||||| ||| ||| | | ||| || || ||||| || | Sbjct 1804834 AGTGGCGTTCTCCATCCTTGAGGGTTTCCCAGTGAATCAGATCTTTGGAGAGATCAACCT 1804893 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | ||||| ||| ||| ||||||| || ||||| ||| || || | || Sbjct 1804894 CCTCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACT 1804953 Query 14225 ATATAGGAAAAACTACAAA 14243 |||||||| |||||||| Sbjct 1804954 GGATAGGAAAGACTACAAA 1804972 >seq40 Length=2822076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||| ||||||||||||||| |||||||| || |||||||| || | | | ||| | Sbjct 2223055 CCAGGTTTTCATTAACAATTCCATCACTGGCAGCAAAAAAGGCAAGGACATGGGAAATGA 2223114 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 ||| | ||| ||| ||||| ||| ||| | | ||| || || ||||| || | Sbjct 2223115 AGTGGCGTTCTCCATCCTTGAGGGTTTCCCAGTGAATCAGATCTTTGGAGAGATCAACCT 2223174 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| | ||||| ||| ||| ||||||| || ||||| ||| || || | || Sbjct 2223175 CCTCAGCAGTCCAGAAAGAAGCCTCAGCTTTCTTGTACATCTGCCAGATGTCATGGTACT 2223234 Query 14225 ATATAGGAAAAACTACAAA 14243 |||||||| |||||||| Sbjct 2223235 GGATAGGAAAGACTACAAA 2223253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586658315120