Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq111 123 2e-23 >seq111 Length=4886044 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| |||||| || | ||||||||||| Sbjct 1690076 CCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAG 1690017 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1690016 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1689957 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | ||| || Sbjct 1689956 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1689897 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1689896 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 120 bits (132), Expect = 2e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| |||||| || | ||||| ||||| Sbjct 1690759 CCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1690700 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1690699 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690640 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| |||||| | || || Sbjct 1690639 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAA-TGTGTCTGAGGGTTCCACT 1690581 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| || ||||| ||||||||||||||| Sbjct 1690580 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| ||||| || | ||||||||||| Sbjct 1689848 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAG 1689789 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1689788 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1689729 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | ||| || Sbjct 1689728 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1689669 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1689668 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| |||||| || | ||||| ||||| Sbjct 1691215 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1691156 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1691155 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1691096 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | ||| || Sbjct 1691095 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1691036 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1691035 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| ||||| || | ||||| ||||| Sbjct 1690532 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690473 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1690472 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690413 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | ||| || Sbjct 1690412 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1690353 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || || ||||| || ||||| ||||| ||||||||| Sbjct 1690352 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | ||||||||||||| ||| ||||| || | ||||| ||||| Sbjct 1689620 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1689561 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 1689560 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 1689501 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| || || | ||| || Sbjct 1689500 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACC 1689441 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||||||||| |||||||| Sbjct 1689440 TCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367936036764