Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq76 111 2e-19 seq71 111 2e-19 seq40 105 9e-18 seq46 100 4e-16 >seq76 Length=1543109 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 |||| || || ||||| || || || || || | ||||||||| |||||||| ||| Sbjct 1518515 CCTGGGTAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCT 1518574 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 | || |||||||| ||||| |||| || || ||| || |||||| ||| || || Sbjct 1518575 GCGTAGTAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAG 1518634 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || | | | |||||||| ||||| || | ||| ||||| |||||||||||||| | Sbjct 1518635 GGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGA 1518694 Query 71557 TGTCTCTTATTAGA 71570 |||||| | || || Sbjct 1518695 TGTCTCATGTTGGA 1518708 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || ||||| ||||| | ||| || | | ||| ||||| || || || | || | Sbjct 1517873 TACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAAT 1517932 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||||||||| |||| ||| |||||||| ||||| || ||||| || |||| ||| | Sbjct 1517933 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAA 1517992 Query 71262 ACTATTTCTAAGACCATGT 71280 ||| ||||| | |||||| Sbjct 1517993 ACTGTTTCTTACCCCATGT 1518011 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| || | Sbjct 1521987 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCGAGGA 1522046 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || |||| || || ||||| || | |||||||||||| |||||| Sbjct 1522047 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1522106 Query 72881 ATTCTACCGTTGTTACTCC 72899 | |||||||| || || || Sbjct 1522107 ACTCTACCGTGGTGACGCC 1522125 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAAT---CCAGGACATTCATTCGGACACATCAAT 72000 || ||||| |||||||| ||| ||| || || || || || | || |||||| Sbjct 1519820 TCAAACTCTTCTCCCCA-GCA--GTCAAAAAGCCCTGGGCACTCGTGAGGGTCCATCAAA 1519876 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 | |||||| ||| | | || || ||||| ||||| ||||||||||| ||||| Sbjct 1519877 GTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 1519936 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || | ||| | || ||| || ||||| || ||||| ||||| || || |||||| Sbjct 1519937 AACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAGGAACTGG 1519996 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 | ||| || | |||||| || |||||||| ||||| Sbjct 1519997 AAAATGTCTGCATGCCATGGCTCCAAGTAAATGGC 1520031 >seq71 Length=3982359 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 |||| || || ||||| || || || ||||| | ||||||||| ||||||||||| Sbjct 1382605 CCTGGGTAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCC 1382546 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 | || |||||||| || || |||| || || ||| || |||||| ||| || || Sbjct 1382545 GCGTAGTAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAG 1382486 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || | | | |||||||| ||||| || | ||| ||||| |||||||||||||| | Sbjct 1382485 GGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGA 1382426 Query 71557 TGTCTCTTATTAGA 71570 |||||| | || || Sbjct 1382425 TGTCTCGTGTTGGA 1382412 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || ||||| ||||||| ||| || | | ||| ||||| ||||| || | || | Sbjct 1383204 TACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAAT 1383145 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||||||||||| |||| ||| |||||||| ||||| || ||||| || || | ||| | Sbjct 1383144 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAA 1383085 Query 71262 ACTATTTCTAAGACCATGT 71280 ||| ||||||| |||||| Sbjct 1383084 ACTGTTTCTAACTCCATGT 1383066 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| || | Sbjct 1379280 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCAAGGA 1379221 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | || || || || |||| || || ||||| || | |||||||||||| |||||| Sbjct 1379220 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1379161 Query 72881 ATTCTACCGTTGTTACTCC 72899 | |||||||| || || || Sbjct 1379160 ACTCTACCGTGGTGACGCC 1379142 >seq40 Length=2822076 Score = 105 bits (116), Expect = 9e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| |||||||| |||||||| || ||||||||||| || ||||| |||||||| || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||| ||||||| ||||| || ||||| ||||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Score = 100 bits (110), Expect = 4e-16 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | ||||| ||| |||||||| || || || || ||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 42207 CAATAAGTCTCTCTCCATAACCGGCA--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 42263 | | | ||||| ||||| | || ||| || |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 >seq46 Length=1907351 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| ||||| || |||||||| || ||||||||||| || ||||| |||||||| || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||| ||||||| ||||| || ||||| ||||| Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 Score = 100 bits (110), Expect = 4e-16 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| || || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | | ||| || || | ||||| ||| |||||||| || || || || ||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 42207 CAATAAGTCTCTCTCCATAACCGGCA--CTG-TCATGTATCCACTTTTGAGCCCAATCGG 42263 | | | ||||| ||||| | || ||| || |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136196652080