Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46 93.3 6e-14 seq40 93.3 6e-14 >seq46 Length=1907351 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || || ||||| || ||| |||| | | | || ||||| | |||| || | Sbjct 1804370 CTATTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAG 1804311 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||||| ||| | | || || | || || ||||||| || || || || ||| Sbjct 1804310 TGGATCGGGGACCAGGAAGCTGACTATGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGAG 1804251 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || ||||| |||||||| ||| | |||||||| ||| ||||| Sbjct 1804250 GGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCATG 1804191 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTAT 125539 || ||||| || |||||| || |||| Sbjct 1804190 CCAGGACTTACCTTCAGTAATGAACTTAT 1804162 >seq40 Length=2822076 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || || ||||| || ||| |||| | | | || ||||| | |||| || | Sbjct 2222648 CTATTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAG 2222589 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||||| ||| | | || || | || || ||||||| || || || || ||| Sbjct 2222588 TGGATCGGGGACCAGGAAGCTGACTATGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGAG 2222529 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||||||||||| || || ||||| |||||||| ||| | |||||||| ||| ||||| Sbjct 2222528 GGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCATG 2222469 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTAT 125539 || ||||| || |||||| || |||| Sbjct 2222468 CCAGGACTTACCTTCAGTAATGAACTTAT 2222440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055883760080