Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq111 95.1 9e-15 >seq111 Length=4886044 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| |||||||| || || || |||||||| ||| || | | ||||| Sbjct 1690289 AACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 1690230 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1690229 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1690170 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || ||| |||| || || || |||||| || | || ||||| Sbjct 1690169 TGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTC 1690110 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| ||||| |||||||| Sbjct 1690109 TTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||||||| || | | | ||| Sbjct 1689833 AACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCT 1689774 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1689773 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1689714 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| || ||||| || | || ||||| Sbjct 1689713 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTC 1689654 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 1689653 TTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||||||| || | | | ||| Sbjct 1690061 AACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCT 1690002 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1690001 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1689942 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| || ||||| || | || ||||| Sbjct 1689941 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTC 1689882 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 1689881 TTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || |||||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 1690972 AACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1690913 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1690912 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1690853 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| || || || |||||| || | || ||||| Sbjct 1690852 TGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTC 1690793 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 1690792 TTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 1689605 AACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1689546 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1689545 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCC 1689486 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCT-AAG-GTAATGG 15329 || ||| ||| ||| |||| ||||||| || | || || || ||| || |||| Sbjct 1689485 TGGATCTTGGCCTTGACATTTTCAATGGTAT--CTGATGGCTCCACCTCAAGTGTGATGG 1689428 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || ||||| ||||| |||||||| Sbjct 1689427 TCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 1690517 AACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCT 1690458 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1690457 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1690398 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| || ||||| || | || ||||| Sbjct 1690397 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTC 1690338 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 1690337 TTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 1691200 AACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCT 1691141 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1691140 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1691081 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| || ||||| || | || ||||| Sbjct 1691080 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTC 1691021 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| |||||||| Sbjct 1691020 TTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| |||||||| || || || |||||||| ||| || | | | ||| Sbjct 1690744 AACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCT 1690685 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | ||||| | || || || || |||||||||||||| Sbjct 1690684 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1690625 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| || || || ||| || || | || ||||| Sbjct 1690624 TGGATCTTGGCCTTGACATTTTCAAT-GTGTCTGAGGGTTCCACTTCCAGTGTGATGGTC 1690566 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| |||||||||||||| Sbjct 1690565 TTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362177619766878