Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq111 87.8 1e-12 >seq111 Length=4886044 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| || || ||||| || || ||| | || |||| Sbjct 1689605 AACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCT 1689546 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| |||||||| ||||| ||||| | ||||| || |||| | |||||||| || Sbjct 1689545 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCC 1689486 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| | ||| ||||||| |||||||| || | || || || Sbjct 1689485 TGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTC 1689426 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || | || |||||||| ||||||||| Sbjct 1689425 TTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 1689393 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 ||||||||||| || ||| ||| || ||||| || |||||| | | || |||| Sbjct 1690061 AACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCT 1690002 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||| |||||||| ||||| ||||| | ||||| || | || | |||||||| || Sbjct 1690001 TCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCC 1689942 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| | ||| || |||| ||||| || || | || || || Sbjct 1689941 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTC 1689882 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | || || ||||| |||||||| Sbjct 1689881 TTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776052060984