Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq111 172 1e-37 seq100 89.7 1e-12 seq144 87.8 4e-12 seq33 87.8 4e-12 >seq111 Length=4886044 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || ||||| |||||||| || ||||| || || || | |||||||| Sbjct 1690286 ACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCC 1690227 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || |||||||| ||||| || | ||||| ||||| || || ||||||||||| ||||| Sbjct 1690226 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1690167 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| |||||||| | || || |||||||| || ||||| || |||||| Sbjct 1690166 ATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTA 1690107 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || ||||| ||||| || |||||| Sbjct 1690106 CCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || || || | || ||||| || |||||||| Sbjct 1689590 GTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCG 1689531 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| ||||| ||||||||||| ||||| ||||| || || Sbjct 1689530 GCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1689471 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | |||||| || || ||||| ||||| || ||||| ||||| || ||| Sbjct 1689470 ACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTT 1689411 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 1689410 TTCACAAAGATTTGCAT 1689394 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| ||| | || ||||| |||||||| || ||||| || || || | || ||||| Sbjct 1690969 ACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 1690910 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || |||||||| ||||| || | ||||| ||||| || || ||||||||||| ||||| Sbjct 1690909 AGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 1690850 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||| | || || |||||||| || ||||| || ||||| Sbjct 1690849 ATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTG 1690790 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||| || |||||| Sbjct 1690789 CCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || || || | || ||||| || |||||||| Sbjct 1690502 GTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCG 1690443 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1690442 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1690383 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 1690382 ACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTT 1690323 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 1690322 TTAACAAAGATTTGCATT 1690305 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || || || || | || ||||| || |||||||| Sbjct 1689818 GTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCG 1689759 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1689758 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1689699 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 1689698 ACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTT 1689639 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 1689638 TTAACAAAGATTTGCATT 1689621 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | || ||||| || |||||||| Sbjct 1691185 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCG 1691126 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1691125 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1691066 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 1691065 ACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTT 1691006 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 1691005 TTAACAAAGATTTGCATT 1690988 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || || || || | || ||||| || |||||||| Sbjct 1690046 GTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCG 1689987 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1689986 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1689927 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 1689926 ACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTT 1689867 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 1689866 TTAACAAAGATTTGCATT 1689849 Score = 138 bits (152), Expect = 3e-27 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | || ||||| || |||||||| Sbjct 1690729 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCG 1690670 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | ||||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 1690669 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTG 1690610 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | || || ||||| || || ||||| || ||||| || || || ||| Sbjct 1690609 ACATTTTC-AATGTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTT 1690551 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 1690550 TTGACAAAAATTTGCATT 1690533 >seq100 Length=894170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || |||||||| ||||| | || ||||| | |||||||||||||||| Sbjct 618883 CTTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCTTCCAACTGTTTTCCAGCAAAAA 618824 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | | |||||||||||||| || |||||| Sbjct 618823 TCAATCTCTGTTGATCAGGGGGAATTCCT 618795 >seq144 Length=4367352 Score = 87.8 bits (96), Expect = 4e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 165245 ACGTGTATAGTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAAT 165304 || |||||||| ||||| ||| | | || ||||| ||| ||| |||||||||||| Sbjct 2126100 ACCTGTATAGTGAGAGCTTGGGACCTGAACAAACCCTTATATTTTGCTCCAGCTATGAAC 2126041 Query 165305 ACACTTATGTGGGAACATCCTATTACTGAGCAGCATATAGAAACTCTTAAGCATATGGGG 165364 || | |||||| | ||||| ||||| | || || ||| | | || || | | || Sbjct 2126040 ACCTTCATGTGGCAGCATCCAATTACAGCACAACAAATAAACATGCTGAAAAACTTTGGA 2125981 Query 165365 TACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATA 165410 || | |||| | | || ||||||||||| ||||| ||||| |||| Sbjct 2125980 TATAAAGAAATCCACTGCATTGAGAAAAAACTAGCATGTGGAGATA 2125935 >seq33 Length=2977081 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || || | ||| || Sbjct 76392 AGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCC 76451 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || ||||| || ||||| || ||||||||||||||||| || |||||| Sbjct 76452 TCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGATCAGGGGGAATTCCT 76502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393118679464