Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq190 197 9e-46 >seq190 Length=2335779 Score = 197 bits (218), Expect = 9e-46 Identities = 293/414 (71%), Gaps = 1/414 (0%) Strand=Plus/Minus Query 25305 GGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 25364 || ||||| | |||||||| | |||||||| ||| |||||||| | | | ||| Sbjct 1049714 GGGTGAGGATTGTAACCCTGAATCTCAAAATCCTCATACTTGAAGTCGTCAATGTTTTCC 1049655 Query 25365 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTC 25424 || | || || ||| ||| |||| || |||||||| | |||||| |||||| | ||| Sbjct 1049654 ACTGTTCTTTTGATCACCAGCTTGGGGAATGGTCTGGGTTTCCTCTCCAGCTGAATTTTC 1049595 Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 || ||||||| ||| | || ||||||||||| ||||||| ||||||||| || || || Sbjct 1049594 AGAGGTTCTATGTGGTTCACATAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCG 1049535 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 || | || || || | || || |||||||| || | ||| | || |||||||| || Sbjct 1049534 GGCTTGAGTCCTGTGATGTGGGCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTG 1049475 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || ||||| | || || | |||| || | |||||| |||||||| ||||| || | Sbjct 1049474 AACGGCACCCCCAGGCCGATAT-CCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCC 1049416 Query 25605 GTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTC 25664 | | |||||| |||||| | | | ||||| ||||| || || | | ||| Sbjct 1049415 ATTACACACGTAGAACTGAACAAAAGCATGACACGGGGGAAGCGCCATCTTATCTAGGTC 1049356 Query 25665 TTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT 25718 ||||||||||| ||| |||||||| | ||| || || || | | |||| Sbjct 1049355 ACAGGGGTTCCAGGCAGACATGATGATGCGTCGGTCGTCCGGATTATTCTTGAT 1049302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136115937134