Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq147 93.3 2e-14 seq142 91.5 8e-14 seq71 87.8 9e-13 seq331 86.0 3e-12 seq93 84.2 1e-11 seq193 82.4 4e-11 seq97 82.4 4e-11 >seq147 Length=3948338 Score = 93.3 bits (102), Expect = 2e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || || |||||| || |||||| || || ||||||| |||| ||||||||||||| Sbjct 3228468 ATGAAGAAAAAAAAAATTTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAG 3228409 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 ||||||||||| ||| |||||||||| |||| | || || ||||||| Sbjct 3228408 CACGACGCTCTAACCGACTGAGCTAACCGGCCATGGAGCATGTTGATTTT 3228359 >seq142 Length=4491256 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||| || || ||||||| |||| ||||||||||||||||||| Sbjct 3673522 AAAAAAT--AATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGAC 3673579 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||| |||||||||| |||||| Sbjct 3673580 GCTCTAACCGACTGAGCTAACCGGCCGT 3673607 Score = 87.8 bits (96), Expect = 9e-13 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||| || |||||| || || ||||||| |||| ||||||||||||| Sbjct 3689309 TTAAAAAAAAAGTCTTCTTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAG 3689250 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||| |||||||||| |||||| Sbjct 3689249 CACGACGCTCTAACCGACTGAGCTAACCGGCCGT 3689216 Score = 84.2 bits (92), Expect = 1e-11 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11441 AATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||||||| | | ||||||| || || | ||||| |||| ||||||||||||| Sbjct 3694297 AATAAAAAAGGTTTACATTGGCCAGTGTGGGGGTTGAACCCACGACATTCGCGTTATTAG 3694238 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||| |||||||||| |||||| Sbjct 3694237 CACGACGCTCTAACCGACTGAGCTAACCGGCCGT 3694204 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| || || ||||||| |||| |||||||||||||||||||||||| ||| Sbjct 3697856 ATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCG 3697915 Query 11514 ACTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 3697916 ACTGAGCTAACCGGCCGT 3697933 Score = 84.2 bits (92), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||| || ||||||| || || ||||||| |||| |||||||||||||| Sbjct 3755168 AAAAAAAAAAAAAGTATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGC 3755109 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||| ||| |||||||||| ||||| Sbjct 3755108 ACGACGCTCTAACCGACTGAGCTAACCGGCCG 3755077 >seq71 Length=3982359 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 2895015 AAAAAAAAAATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 2895074 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||| |||| Sbjct 2895075 CTCTAACCGACTGAGCTAACCGGCC 2895099 >seq331 Length=568697 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | ||||||| || || ||||||| |||| |||||||||||||||||||| Sbjct 500654 AAAAAAAATATTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACG 500595 Query 11505 CTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||| |||||||||| ||||| Sbjct 500594 CTCTAACCGACTGAGCTAACCGGCCG 500569 >seq93 Length=865943 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| | ||||| || || ||||||| |||| |||||||||||||||| Sbjct 56477 AAAAAAAAATTA---TGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCAC 56533 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| ||| |||||||||| |||||| Sbjct 56534 GACGCTCTAACCGACTGAGCTAACCGGCCGT 56564 >seq193 Length=1786188 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| || || ||||||| |||| |||||||||||||||||||||||| ||| | Sbjct 611366 TTGGCCAGTGTGGGGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCGA 611307 Query 11515 CTGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 611306 CTGAGCTAACCGGCCGT 611290 >seq97 Length=1445946 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 || ||||||| |||| |||||||||||||||||||||||| ||| |||||||||| || Sbjct 1300785 GGGTCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAACCGG 1300844 Query 11528 CCGT 11531 |||| Sbjct 1300845 CCGT 1300848 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261490059081208