Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq111 156 4e-33 >seq111 Length=4886044 Score = 156 bits (172), Expect = 4e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | ||||||||||| || | || |||||||| || | ||| | Sbjct 1689628 TTTGCATTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGT 1689569 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1689568 AGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1689509 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||| || ||||||||||| | || || |||||||| | | || || | Sbjct 1689508 CTGGAGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATG 1689449 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || |||| |||||||| || ||||| || |||||||||||||| |||||| Sbjct 1689448 GCTCCACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 1689393 Score = 149 bits (164), Expect = 6e-31 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | ||||||||||| || | || |||||||| || | ||| | Sbjct 1689856 TTTGCATTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGT 1689797 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| | ||| | ||| ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1689796 AATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1689737 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | || || |||||||| | | ||||| | | Sbjct 1689736 CTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGG 1689677 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 1689676 GCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 149 bits (164), Expect = 6e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | | ||||||||||| || | || |||||||| || | Sbjct 1690545 AAAAATTTGCATTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAAT 1690486 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| | ||| | ||| ||||||||||||||| ||||||| ||||| || Sbjct 1690485 GTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTG 1690426 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| || || ||||||||||| | || || |||||||| | | ||||| Sbjct 1690425 CTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTC 1690366 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 1690365 TGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | ||||||||||| || | || || ||||| || | ||| | Sbjct 1690084 TTTGCATTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGT 1690025 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| | ||| | ||| ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1690024 AATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1689965 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | || || |||||||| | | ||||| | | Sbjct 1689964 CTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGG 1689905 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 1689904 GCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | |||||||| || || | || |||||||| || | ||| | Sbjct 1690995 TTTGCATTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGT 1690936 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1690935 AGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1690876 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | || || |||||||| | | |||||| | | Sbjct 1690875 CTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGG 1690816 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || ||||| |||||||| ||||| Sbjct 1690815 GTTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Score = 140 bits (154), Expect = 3e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | |||||||| || || | || |||||||| || | ||| | Sbjct 1690312 TTTGCATTCCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGT 1690253 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | || ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1690252 AGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1690193 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | || || || ||||| | | |||||| | | Sbjct 1690192 CTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGG 1690133 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || ||||| || ||||| |||||||| ||||| Sbjct 1690132 GTTCTACTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 138 bits (152), Expect = 1e-27 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 94762 TTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTT 94821 ||| || || | ||| |||||| | | ||||||||||| || | || || ||||| Sbjct 1691234 TTTCTTGAATTGTTAATTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTT 1691175 Query 94822 TTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAA 94881 || | ||| || ||| | ||| | ||| ||||||||||||||| ||||||| || Sbjct 1691174 CTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAA 1691115 Query 94882 TCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGAC 94941 ||| ||||||||||| || || ||||||||||| | || || |||||||| | | Sbjct 1691114 TCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAAT 1691055 Query 94942 AGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 ||||| | | | || || || | |||||||| || || || || ||||| |||||||| Sbjct 1691054 GGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGAT 1690995 Query 95002 CTGCAT 95007 ||||| Sbjct 1690994 TTGCAT 1690989 Score = 132 bits (146), Expect = 4e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||| | | ||||||||||| || | || || ||||| || | ||| | Sbjct 1690767 TTTGCATTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGT 1690708 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| ||||||||||||||| ||||||| ||||| ||||||| Sbjct 1690707 AGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGAT 1690648 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||||||||| | || || |||||||| | | ||||| | | Sbjct 1690647 CTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTC-AATGTGTCTGAGG 1690589 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || ||||| ||||| || ||||| Sbjct 1690588 GTTCCACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289193896880