Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq40 84.2 2e-11 >seq40 Length=2822076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 21172 CATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTC 21231 ||||| |||||||| || || || | || | |||||| || |||||||||||||| || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 21232 CAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 ||| |||||| |||||||| ||||| ||||| || Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATTCTC 2221700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531898419743920