Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq76 132 6e-26 seq71 127 3e-24 seq46 109 7e-19 seq40 109 7e-19 >seq76 Length=1543109 Score = 132 bits (146), Expect = 6e-26 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || || |||||| | ||||||||| |||||||| || |||| Sbjct 1518521 TAGGTCTCGTACGGCCCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAG 1518580 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 |||||||| |||||||||| || |||||| || |||||| ||| || || || | Sbjct 1518581 TAAATGGTCTCGAAGATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAAT 1518640 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1518641 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1518700 Query 62757 TTATTAGA 62764 | || || Sbjct 1518701 ATGTTGGA 1518708 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||||| | |||||| | | | || ||| || ||||| ||||| ||||||||||| || Sbjct 1519870 CATCAAAGTCCACTCCTCATTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1519929 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| || | ||| | || ||| |||||||| || ||||| ||||| || || || Sbjct 1519930 AGCGTAGAACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1519989 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 |||| | ||| || | |||||| || |||||||| ||||| | | ||||||| Sbjct 1519990 GAACTGGAAAATGTCTGCATGCCATGGCTCCAAGTAAATGGCGAAGGCACCAGGCC 1520045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || ||||| ||||| | ||| |||| | ||| ||||| || || || | || | Sbjct 1517873 TACCTGGAATTCCCCAGATAGTACCCTCCTTGAGTAGATATTGCTCGTGTAGGCCTCAAT 1517932 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 ||||||||||| |||| ||| |||||||| ||||| || ||||| || |||| ||| || Sbjct 1517933 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGGGCCAACAACAA 1517992 Query 62456 ACTATTTCT 62464 ||| ||||| Sbjct 1517993 ACTGTTTCT 1518001 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| || | Sbjct 1521987 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCGAGGA 1522046 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | || || ||||| |||| || || ||||| || | || ||||||||| |||||| Sbjct 1522047 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1522106 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 | |||||||| || || || || | || | ||| |||||||| Sbjct 1522107 ACTCTACCGTGGTGACGCCGGGGTAAAGCCCATTAATCACCTTCAT 1522152 >seq71 Length=3982359 Score = 127 bits (140), Expect = 3e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || ||||| || || || ||| || | ||||||||| ||||||||||| |||| Sbjct 1382599 TAGGTCTCGTACGGCCCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAG 1382540 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696 |||||||| || ||||||| || |||||| || |||||| ||| || || || | Sbjct 1382539 TAAATGGTCTCAAAGATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAAT 1382480 Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756 | | |||||||| ||||| || | ||| ||||| |||||||||||||| | ||||||| Sbjct 1382479 CTCATCAGAATAAAGGCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATGTCTC 1382420 Query 62757 TTATTAGA 62764 | || || Sbjct 1382419 GTGTTGGA 1382412 Score = 105 bits (116), Expect = 8e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || ||||| ||||||| ||| |||| | ||| ||||| ||||| || | || | Sbjct 1383204 TACCTGGAATTCCCCAGACAGTACCCTCCTTGAGTAGATATTGCTGGTGTAGGCCTCAAT 1383145 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 ||||||||||| |||| ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 1383144 GGACTCATTATTCCCCAGAATCTGAGCAGTGGATGCTGTTGGCATGGGAGCTAACAACAA 1383085 Query 62456 ACTATTTCTAA 62466 ||| ||||||| Sbjct 1383084 ACTGTTTCTAA 1383074 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || ||||||||||| ||||| || || || || || ||||| || | Sbjct 1379280 CACTGAAGACTTTCTTGGTTTCCTTGTGGAGATTGGACACCGCGATCCTTGCGGCAAGGA 1379221 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | || || ||||| |||| || || ||||| || | || ||||||||| |||||| Sbjct 1379220 TTGCGTAGTCCGGGTGTTTGGTGGTCATCGTGGCGGCCGTCTCTGCTGCCAGATTGTCCA 1379161 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 | |||||||| || || || || | || | ||| |||||||| Sbjct 1379160 ACTCTACCGTGGTGACGCCGGGGTAAAGCCCATTAATCACCTTCAT 1379115 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||||| | |||||| ||| | || ||| || ||||| ||||| ||||||||||| || Sbjct 1381293 CATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAAGAGGTCAGGAATCCACAG 1381234 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||| || | ||| | || || |||||||| || ||||| ||||| || || || Sbjct 1381233 AGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGTGTTCTTCTTGCAGTCCAG 1381174 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 |||| | ||| || | |||||| || |||| ||| ||||| Sbjct 1381173 GAACTGGAAAATGTCTGCATGCCATGGCTCCAGGTAAATGGC 1381132 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 ||||||||||| || ||||| | ||| |||||||||||||| | ||| | | || Sbjct 1379996 TGATGAATTCCCACAGCGACCCTCATCAACATGTGCTGAGGGCGCTCAGCCACTTTTCCA 1379937 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 63819 |||||| ||| |||||||| | ||||| || || || || ||||| | ||| ||||| Sbjct 1379936 TTTATTCTCAGTAAGTAGGACCTCTCCAATGTCTTGAATCCGAAATACTGGTAGCTGAAA 1379877 Query 63820 AGTCTCGTTCGTAAATAA 63837 || || || ||||||| Sbjct 1379876 --TCCCGATCATAAATAA 1379861 >seq46 Length=1907351 Score = 109 bits (120), Expect = 7e-19 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| || || || ||||| ||||| | || ||||| | Sbjct 1804148 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 1804207 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| ||| || ||| |||||||| || || || |||||||||| Sbjct 1804208 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 1804267 Query 33446 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33502 | | | ||||| ||||| | || || ||| |||||||| ||||| || | Sbjct 1804268 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 1804327 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 1804328 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 1804373 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| ||||| || |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 1803327 CATAACCCCCATCTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 1803386 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| ||||||| ||||| || ||||| ||||| Sbjct 1803387 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 1803419 >seq40 Length=2822076 Score = 109 bits (120), Expect = 7e-19 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || ||||| || || || ||||| ||||| | || ||||| | Sbjct 2222426 CCTCATCTCTGCTGATAAGTTCATTACTGAAGGTAAGTCCTGGCATGATTCCCCGCTTCT 2222485 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | | ||| || |||| ||| || ||| |||||||| || || || |||||||||| Sbjct 2222486 TCAACCAGAAGATGGCAGCAAAGCTCCCACTGAAGAAGATGCCCTCCACAGCAGCAAAGG 2222545 Query 33446 CAATAAGTCTCTCTCCATAACCGGC--GCT-GTCATGTATCCACTTTTGAGCCCAATCGG 33502 | | | ||||| ||||| | || || ||| |||||||| ||||| || | Sbjct 2222546 CCACCACCCTCTCCCCATAGTCAGCTTCCTGGTCCCCGATCCACTTGATGGCCCAGTCTG 2222605 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||| || |||||||||||||| || || ||||| || || || Sbjct 2222606 CCTTCTTCTTGACACAAGGCATCGTCTCAATTGCATTGAATAGGTA 2222651 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| |||||||| |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 2221605 CATAACCCCCATTTTCTGGTATTCTCCTACACGTTTTTCAAAGAAATTTGTCTTTCCCTC 2221664 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| ||||||| ||||| || ||||| ||||| Sbjct 2221665 CAAAGATATATGCTCCATAAAGTCAAAGGGATT 2221697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944412311280