Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq76 122 2e-22 seq71 107 5e-18 >seq76 Length=1543109 Score = 122 bits (134), Expect = 2e-22 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 |||||| |||||| || | | || || ||| || ||| |||| |||| ||| || Sbjct 1519689 TATGAAAAGGAGGGTAAAGGAAGGAAAACGATTAAGGCCCAGCAGCTGTGGTACGCCGTC 1519630 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || || ||||||| ||||| || || || || ||| ||||||| ||| || |||||| Sbjct 1519629 ATCGAGTCGCAGACCGAGACCGGGACTCCGTACATGCTGTACAAGGATCACTGTAACCGC 1519570 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 ||||||||||||||| |||| || || || | |||||||| |||||||||||| | Sbjct 1519569 AAGTCCAACCAGCAGAACCTGGGGACCATCAAATGTAGCAACCTGTGTACCGAGATTGTG 1519510 Query 364255 GAATACA 364261 || |||| Sbjct 1519509 GAGTACA 1519503 >seq71 Length=3982359 Score = 107 bits (118), Expect = 5e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 364075 TATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 |||||| ||||| || | | || || ||| || ||| |||| |||| ||| || Sbjct 1381481 TATGAAAAAGAGGGTAAAGGAAGGAAAACGATTAAAGCCCAGCAGCTGTGGTACGCCGTC 1381540 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || || ||||||| ||||| || || || || ||| ||||||| ||| || |||||| Sbjct 1381541 ATCGAGTCGCAGACCGAGACCGGGACTCCGTACATGCTGTACAAGGATCACTGTAACCGC 1381600 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 ||||| ||||||||| |||| || || || | |||||||| ||||||||||| | Sbjct 1381601 AAGTCAAACCAGCAGAACCTGGGGACCATCAAATGTAGCAACCTGTGTACCGAGATCGTG 1381660 Query 364255 GAATACA 364261 || |||| Sbjct 1381661 GAGTACA 1381667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 168/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || || ||||| || || || ||||| ||||| || ||||| |||| || || | Sbjct 1381123 GGTGCCTTTGCCATTTACCTGGAGCCATGGCATGCAGACATTTTCCAGTTCCTGGACTGC 1381182 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| || || |||||| | | || || ||| ||||||| || || ||| || Sbjct 1381183 AAGAAGAACACAGGGAAGGAGGAACAGAGGGCCCGCGATTTGTTCTACGCTCTGTGGATT 1381242 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAG--GCAGGTAAGAATTGGTCACTCTTTTG--CCC 364013 |||||| || ||||||||||||||| | | | || | ||| ||| | || ||| Sbjct 1381243 CCTGACCTCTTCATGAAGCGCGTGGAGAAGAACG--AGGAGTGG--ACTTTGATGGACCC 1381298 Query 364014 ACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAA 364073 ||||| || ||||| |||| || ||||| || || | || | || ||| |||| Sbjct 1381299 TCACGAGTGCCCAGGGCTTTTTGACTGCTGGGGAGAAGAGTTTGAGACCCTCTACCAAAA 1381358 Query 364074 GTA 364076 ||| Sbjct 1381359 GTA 1381361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347621679956