Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq111 91.5 1e-13 >seq111 Length=4886044 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || ||||||||||| || ||||||||||||| Sbjct 1690759 CCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1690700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| ||||| || ||| | || | | ||| || || || Sbjct 1690699 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690640 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || || ||| || | | | ||||| ||| ||| Sbjct 1690639 ATTCCTTCTTTGTCCTGGATCTTGGC--CTTGACATTTTCAAT-GTGTCTGAGGGTTCCA 1690583 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || ||||| || |||||||||||||| |||||| Sbjct 1690582 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| ||||| || ||||||||||||| Sbjct 1690304 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690245 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||||| || ||| | || | | ||| || || || Sbjct 1690244 AGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690185 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || ||| || || | | | |||||| ||| || Sbjct 1690184 ATTCCTTCTTTGTCCTGGATCTTGGCT--TTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690127 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || || || || ||||||||||| || |||||| Sbjct 1690126 CTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || ||||| ||||| || ||||||||||||| Sbjct 1690987 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690928 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||||| || ||| | || | | ||| || || || Sbjct 1690927 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690868 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || || ||| || | | | |||||| ||| || Sbjct 1690867 ATTCCTTCTTTGTCCTGGATCTTGGC--CTTGACATTTTCAATAGTGTCTGAGGGTTCTA 1690810 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || ||||| || ||||||||||| || |||||| Sbjct 1690809 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || ||||||||||| || ||||||||||||| Sbjct 1691215 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1691156 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||| ||||| || ||| | || | | ||| || || || Sbjct 1691155 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1691096 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || || ||| || | | | ||||| |||||| Sbjct 1691095 ATTCCTTCTTTGTCCTGGATCTTGGC--CTTGACATTTTCAATGGTGTCTGAGGGCTCTA 1691038 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || ||||| || ||||| ||||| || |||||| Sbjct 1691037 CTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086232550420