Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq294 132 3e-26 seq143 132 3e-26 seq111 96.9 2e-15 >seq294 Length=160532 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 49258 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 49199 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 49198 ATCCATTCATGCGCGTCACTAATTAGATGACGA 49166 Score = 129 bits (142), Expect = 4e-25 Identities = 85/93 (91%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||||||||||| |||||||||||||||||||||||||||||| || |||||||||| Sbjct 13489 GCCCGTTCCCT-GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 13431 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 13430 ATCCATTCATGCGCGTCACTAATTAGATGACGA 13398 Score = 118 bits (130), Expect = 7e-22 Identities = 83/92 (90%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG----GGGTAATCTCGTTAA 25959 ||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 31357 GCCCGTTCCCT-GGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGAATCTCGTTAA 31299 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| ||||||||||||||| |||||||||||| Sbjct 31298 TCCATTCATGCGCGTCACT-ATTAGATGACGA 31268 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 46943 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCGG 46884 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 46883 GGAAGTATTTAGCCTTA 46867 Score = 113 bits (124), Expect = 3e-20 Identities = 72/77 (94%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 11205 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCG- 11147 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 11146 GGGAGTATTTAGCCTTA 11130 Score = 109 bits (120), Expect = 4e-19 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 29084 CTCTCTCTTCAAAGTTCTTTTCAACTT-CCCTCACGGTACTTGTTTGCTATCGGACTCGG 29026 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 29025 GGAAGTATTTAGCCTTA 29009 >seq143 Length=4187197 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 4141473 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 4141532 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 4141533 ATCCATTCATGCGCGTCACTAATTAGATGACGA 4141565 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 4157245 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 4157186 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 4157185 ATCCATTCATGCGCGTCACTAATTAGATGACGA 4157153 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 4175508 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 4175449 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 4175448 ATCCATTCATGCGCGTCACTAATTAGATGACGA 4175416 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 3347020 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 3346961 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||| ||||||||||||||||||| Sbjct 3346960 ATCCATTCATGCGTGTCACTAATTAGATGACGA 3346928 Score = 120 bits (132), Expect = 2e-22 Identities = 78/86 (91%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 4142172 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 4142113 Query 25959 ATCCTTTCATGCGCGTCACTAATTAG 25984 |||| ||||||||||||||||||||| Sbjct 4142112 ATCCATTCATGCGCGTCACTAATTAG 4142087 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 4154930 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCGG 4154871 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 4154870 GGAAGTATTTAGCCTTA 4154854 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 4173193 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCGG 4173134 Query 20007 GGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 4173133 GGAAGTATTTAGCCTTA 4173117 Score = 87.8 bits (96), Expect = 1e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 ||||||||||||||||||| |||||||||| ||||| | |||||| |||| || | |||| Sbjct 614596 CAAAGTTCTTTTCAACTTTTCCTCACGGTATTTGTTTGTTATCGGACTCGGGGAAGTATT 614655 Query 20016 TAGCCTTA 20023 |||||||| Sbjct 614656 TAGCCTTA 614663 >seq111 Length=4886044 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||| ||||| || ||| ||||| ||||| ||||| || || | || | Sbjct 1690293 ACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1690234 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | |||||||||||||| || | | || ||||| | ||||| |||||||| Sbjct 1690233 GTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690174 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || || ||||| | | ||| ||| ||| ||||| | ||| || Sbjct 1690173 GTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGAT 1690114 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || | |||||| || || || ||||| Sbjct 1690113 GGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||||||||||||| || ||| |||||| ||||| |||||||| || | || | Sbjct 1690064 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCA 1690005 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||||||||||| || | | || ||||| | ||||| ||||||||| Sbjct 1690004 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1689945 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || ||| ||||| | | || ||| || ||||| | ||| || Sbjct 1689944 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1689885 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1689884 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||||||||| || ||| ||||| ||||| |||||||| || | || | Sbjct 1689837 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCC 1689778 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||||| || | | || ||||| | ||||| |||||||| Sbjct 1689777 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1689718 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | | || ||| || ||||| | ||| || Sbjct 1689717 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGAT 1689658 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1689657 GGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689622 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||| ||||| || ||| ||||| ||||| ||||| || || | || | Sbjct 1690976 ACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1690917 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||||| || | | || ||||| | ||||| |||||||| Sbjct 1690916 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690857 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | | ||| ||| ||| ||||| | ||| || Sbjct 1690856 GTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGAT 1690797 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1690796 GGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCAT 1690761 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||||||||| || ||| |||||| ||||| ||||| || || | || | Sbjct 1691204 ACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 1691145 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||||| || | | || ||||| | ||||| |||||||| Sbjct 1691144 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1691085 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | | || ||| || ||||| | ||| || Sbjct 1691084 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGAT 1691025 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1691024 GGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||||||||||||| || ||| |||||| ||||| ||||| || || | || | Sbjct 1690747 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1690688 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | |||||||||||||| || | | || ||||| | ||||| ||||||||| Sbjct 1690687 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690628 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || ||| ||||| | | || ||| ||| ||||| | ||| || Sbjct 1690627 TCCTGGATCTTGGCCTTGACATT-TTCAATGTGTCTGAGGGTTCCACTTCCAGTGTGATG 1690569 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1690568 GTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||||||||| || ||| ||||| ||||| ||||| || || | || | Sbjct 1689609 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCC 1689550 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||||| || | | || ||||| | |||| |||||||| Sbjct 1689549 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 1689490 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | | |||||| || || || | ||| || Sbjct 1689489 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGAT 1689430 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || | ||||||||| || || |||||| Sbjct 1689429 GGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 1689393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||||||||||||| || ||| ||||| ||||| ||||| || || | || | Sbjct 1690521 ACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 1690462 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||||||||||| || | | || ||||| | ||||| |||||||| Sbjct 1690461 ATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 1690402 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| || || ||| ||||| | | || ||| || ||||| | ||| || Sbjct 1690401 GTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGAT 1690342 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | |||||| || || || ||||| Sbjct 1690341 GGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945738583498