Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq218 82.4 8e-11 seq216 82.4 8e-11 >seq218 Length=466019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38520 GTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGG 38579 ||||||||||||| || | ||| || || | | |||||||||||| |||||| || ||| Sbjct 120372 GTCAAATGTTTCTACTGTGACGGGGGGCTGAGGAACTGGGAGCCTGGGGACGACCCCTGG 120431 Query 38580 GCGCAGCACGCGCGCTGGTTCGACAGGTGCGCTTACGTGCTCACCGTCAAAGG 38632 | | | ||||| ||||||||| | || | | ||||| ||||||||||| Sbjct 120432 GTGGAACACGCTCGCTGGTTCCCGCGCTGTTCCTTCGTGCGGACCGTCAAAGG 120484 >seq216 Length=748682 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 38520 GTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGTGG 38579 ||||||||||||| || | ||| || || | | |||||||||||| |||||| || ||| Sbjct 23993 GTCAAATGTTTCTACTGTGACGGGGGGCTGAGGAACTGGGAGCCTGGGGACGACCCCTGG 24052 Query 38580 GCGCAGCACGCGCGCTGGTTCGACAGGTGCGCTTACGTGCTCACCGTCAAAGG 38632 | | | ||||| ||||||||| | || | | ||||| ||||||||||| Sbjct 24053 GTGGAACACGCTCGCTGGTTCCCGCGCTGTTCCTTCGTGCGGACCGTCAAAGG 24105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537600794225680