Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq111 143 2e-29 >seq111 Length=4886044 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | ||||| || || |||| || ||||| || || | Sbjct 1689622 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCA 1689681 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || || || || ||||| Sbjct 1689682 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1689741 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| |||||||||||||| Sbjct 1689742 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAAC 1689801 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | ||||| || ||||| | || ||||| Sbjct 1689802 ATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGG 1689848 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || ||||| || |||| || ||||| ||| || | Sbjct 1690078 ATGCAAATCTTTGTCAAAACCCTCACTGGTAAGACCATCACACTGGAAGTAGAACCCTCA 1690137 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || || || ||||| || || || || || ||||| Sbjct 1690138 GACACTATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1690197 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || || ||||||| ||||||| |||||| Sbjct 1690198 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAAC 1690257 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | |||||||| ||||| | || ||||| Sbjct 1690258 ATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGG 1690304 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | ||||| || || |||| || ||||| ||| || | Sbjct 1690761 ATGCAAATCTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAACCCTCA 1690820 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| || || || ||||| || || || || || ||||| Sbjct 1690821 GACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1690880 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| ||||||| ||||||| |||||| Sbjct 1690881 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1690940 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | |||||||| ||||| | || ||||| Sbjct 1690941 ATTCAGAAGGAATCCACCCTCCATTTAGTGTTGCGTCTTCGTGGAGG 1690987 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || |||| ||||| ||||| | | Sbjct 1689394 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAGACCATCACACTTGAGGTGGAGCCATCA 1689453 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || || || ||||| || || || || || ||||| Sbjct 1689454 GATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCTCCAGATCAG 1689513 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| ||||||| ||||||| |||||| Sbjct 1689514 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 1689573 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | ||||| || ||||| | || ||||| Sbjct 1689574 ATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGG 1689620 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | ||||| || || |||| || ||||| || || | Sbjct 1689850 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCA 1689909 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || || || || ||||| Sbjct 1689910 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1689969 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| |||||||||||||| Sbjct 1689970 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGATTACAAC 1690029 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||||| || ||||| | || ||||| Sbjct 1690030 ATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGG 1690076 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | ||||| || || |||| || ||||| || || | Sbjct 1690306 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCA 1690365 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || || || || ||||| Sbjct 1690366 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1690425 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| ||||||| |||||| Sbjct 1690426 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1690485 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||||||| | ||||| || ||||| | || ||||| Sbjct 1690486 ATTCAGAAGGAATCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGG 1690532 Score = 136 bits (150), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | ||||| || || |||| || ||||||||| || | Sbjct 1690534 ATGCAAATTTTTGTCAAAACCCTCACCGGCAAGACCATCACACTGGAAGTGGAACCCTCA 1690593 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || | || |||| || || || ||||| || || || || || ||||| Sbjct 1690594 GACACATTGAAA-ATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1690652 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| ||||||| |||||| Sbjct 1690653 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1690712 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||||| || ||||| | || ||||| Sbjct 1690713 ATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGCCTTCGTGGAGG 1690759 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | ||||| || || |||| || ||||| || || | Sbjct 1690989 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAGACCATCACACTGGAAGTAGAGCCCTCA 1691048 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||| || || || || || ||||| Sbjct 1691049 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 1691108 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| ||||||| |||||| Sbjct 1691109 CAGAGATTGATCTTTGCCGGAAAACAGCTGGAAGATGGCCGCACACTCTCCGACTACAAC 1691168 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || |||||| | ||||| || ||||| | || ||||| Sbjct 1691169 ATTCAGAAGGAGTCCACCCTCCATTTGGTGTTGCGTCTTCGTGGAGG 1691215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726168674270