Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq46 136 7e-27 seq40 136 7e-27 seq76 125 1e-23 seq71 116 7e-21 >seq46 Length=1907351 Score = 136 bits (150), Expect = 7e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||||||||| || ||||||||||||| |||||||| |||| Sbjct 1804370 CTATTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAG 1804311 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| | | || || | || |||||| |||| |||||| | || || ||| Sbjct 1804310 TGGATCGGGGACCAGGAAGCTGACTATGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGAG 1804251 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 |||||||||||| || ||| || ||||||||||| | ||| || || ||| Sbjct 1804250 GGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCATG 1804191 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || ||||| |||||| || ||||| |||||||| || |||| Sbjct 1804190 CCAGGACTTACCTTCAGTAATGAACTTATCAGCAGAGATGAGG 1804148 >seq40 Length=2822076 Score = 136 bits (150), Expect = 7e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| || || ||||||||||| || ||||||||||||| |||||||| |||| Sbjct 2222648 CTATTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAG 2222589 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||||| | | || || | || |||||| |||| |||||| | || || ||| Sbjct 2222588 TGGATCGGGGACCAGGAAGCTGACTATGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGAG 2222529 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 |||||||||||| || ||| || ||||||||||| | ||| || || ||| Sbjct 2222528 GGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCATG 2222469 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || ||||| |||||| || ||||| |||||||| || |||| Sbjct 2222468 CCAGGACTTACCTTCAGTAATGAACTTATCAGCAGAGATGAGG 2222426 >seq76 Length=1543109 Score = 125 bits (138), Expect = 1e-23 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || |||||||||||| || | || ||||||| ||| || ||||| |||| |||| Sbjct 1518493 CACCCCCTTGCTGACAGGACACCCTGGGTAGGTCTCGTACGGCCCGTCACGCTCAGCCAA 1518552 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | ||| || | || | || |||||||| ||||||||||||||| ||||| | | Sbjct 1518553 TTCACAACTGGCCTCTAACGCTGCGTAGTAAATGGTCTCGAAGATCTGTTTGTTTA-GAA 1518611 Query 244438 GCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || || ||| | ||| |||||||| | ||||| || ||| ||||||||||||||| Sbjct 1518612 GCTGGGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCT 1518671 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 | || || || ||||| || | |||| | ||||||| ||| |||| Sbjct 1518672 GAACTCCAATACCGATAGGGCGATGTCTCATGTTGGACCGCTTGGC 1518717 Score = 116 bits (128), Expect = 7e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||||||| | | || |||||| ||||||||||| || ||||| || || |||||||| Sbjct 1519486 CACCTCCTCTGGGCTGCTGTACTCCACAATCTCGGTACACAGGTTGCTACATTTGATGGT 1519545 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||||| ||| || ||||||||| ||| ||| |||||||| |||||| | || Sbjct 1519546 CCCCAGGTTCTGCTGGTTGGACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGT 1519605 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT 244881 |||||||||| ||| | ||| |||| || ||| || | | ||||| | ||| Sbjct 1519606 CCCGGTCTCGGTCTGCGACTCGATGACGGCGTACCACAGCTGCTGGGCCTTAATCGT 1519662 >seq71 Length=3982359 Score = 116 bits (128), Expect = 7e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || |||||||||||| || | || ||||||| ||| || ||||| |||| ||||| Sbjct 1382627 CACCCCCTTGCTGACAGGACACCCTGGGTAGGTCTCGTACGGCCCGTCACGCTCGGCCAA 1382568 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | ||| || | || | || |||||||| |||||||| |||||| ||||| | | Sbjct 1382567 TTCACAACTGGCCTCTAATGCCGCGTAGTAAATGGTCTCAAAGATCTGTTTGTTTA-GAA 1382509 Query 244438 GCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || | ||| | ||| |||||||| | ||||| || ||| ||||||||||||||| Sbjct 1382508 GCTGAGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCT 1382449 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 | || || || ||||| || | |||| | ||||||| || |||| Sbjct 1382448 GAACTCCAATACCGATAGGGCGATGTCTCGTGTTGGACAGCTTGGC 1382403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334974082080