Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq190 138 1e-27 >seq190 Length=2335779 Score = 138 bits (152), Expect = 1e-27 Identities = 196/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 20192 TAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGA 20251 |||| ||| ||||||||||| ||||| | || || ||||| | || || || | || Sbjct 1049573 TAGACGTGAGCATCTCCCAAAGTGTGGACGAAATCGCCGGGCTTGAGTCCTGTGATGTGG 1049514 Query 20252 GCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATG 20311 || | ||| || || ||||||||||| ||||| || || || || || |||| || || Sbjct 1049513 GCTATCATGTAGGTCAAGAGGGAATAACTGGCGATATTGAACGGCACCCCCAGGCCGATA 1049454 Query 20312 TCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA-CA 20370 || || || | ||| |||||||||||||| || || || | | || || || ||| || Sbjct 1049453 TCCCCGGATCGCTGGTACAGCTGACAGGAGAGTTCGCCATTACACACGTAGAACTGAACA 1049394 Query 20371 TAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 || | ||||| || |||||||||||| | ||| |||||||| ||| |||| Sbjct 1049393 AAAGCA-TGACACGGGGGAAGCGCCATCTTATCTAGGTCACAGGGGTTCCAGGCAGACAT 1049335 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 ||||| | || |||| ||||||||| || || Sbjct 1049334 GATGATGCGTCGGTCGTCCGGATTATTCTTGAT 1049302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441370824856720