Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq321 89.7 4e-13 seq294 89.7 4e-13 seq143 89.7 4e-13 >seq321 Length=722770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 235449 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 235508 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 235509 ATAACTGATTTAATGAGCCATTCGCGGTTTC 235539 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 235449 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 235508 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 235509 ATAACTGATTTAATGAGCCATTCGCGGTTTC 235539 >seq294 Length=160532 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 43803 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 43744 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 43743 ATAACTGATTTAATGAGCCATTCGCGGTTTC 43713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 43803 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 43744 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 43743 ATAACTGATTTAATGAGCCATTCGCGGTTTC 43713 >seq143 Length=4187197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 4151790 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 4151731 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 4151730 ATAACTGATTTAATGAGCCATTCGCGGTTTC 4151700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 4151790 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 4151731 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 4151730 ATAACTGATTTAATGAGCCATTCGCGGTTTC 4151700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 4170052 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 4169993 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | ||||||| || ||||||||||| ||| || Sbjct 4169992 ATAACTGATTTAATGAGCCATTCGCGGTTTC 4169962 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||| ||| |||||| ||||| Sbjct 4170052 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACC 4169993 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | ||||||| || ||||||||||| ||| || Sbjct 4169992 ATAACTGATTTAATGAGCCATTCGCGGTTTC 4169962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397060667567116