Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq111 138 3e-27 >seq111 Length=4886044 Score = 138 bits (152), Expect = 3e-27 Identities = 149/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||| ||||| |||||||| | |||||||| || || Sbjct 1690269 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAA 1690210 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || ||||| || Sbjct 1690209 GATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCTTTGAC 1690153 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| || | ||||||||| || ||||| ||||| || || || || || Sbjct 1690152 ATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTACCAGTGAGGGTTTT 1690093 Query 288459 GACGAATATCTGCATT 288474 ||| || || |||||| Sbjct 1690092 GACAAAGATTTGCATT 1690077 Score = 134 bits (148), Expect = 3e-26 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||| ||||| || ||||| | |||||||| || || Sbjct 1690952 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAA 1690893 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1690892 GATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 1690836 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| || | ||||||||| || ||||| ||||| ||||| || || || Sbjct 1690835 ATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTT 1690776 Query 288459 GACGAATATCTGCATT 288474 ||| || || |||||| Sbjct 1690775 GACAAAGATTTGCATT 1690760 Score = 120 bits (132), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||| ||||| || ||||| | |||||||| || || Sbjct 1690497 TTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAA 1690438 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1690437 GATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 1690381 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | |||||||| || ||||| ||||| ||||| || || || Sbjct 1690380 ATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTT 1690321 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1690320 AACAAAGATTTGCATT 1690305 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| ||||| || ||||| | |||||||| || ||| Sbjct 1690723 TCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAG 1690664 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1690663 ATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACA 1690607 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | ||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 1690606 TTTTCAAT-GTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTG 1690548 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 1690547 ACAAAAATTTGCATT 1690533 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| ||||| || ||||| | |||||||| || ||| Sbjct 1691179 TCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAG 1691120 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1691119 ATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACA 1691063 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | |||||||| || ||||| ||||| ||||| || || || Sbjct 1691062 TTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTA 1691003 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 1691002 ACAAAGATTTGCATT 1690988 Score = 116 bits (128), Expect = 9e-21 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || || |||| ||| ||||| || ||||| | |||||||| || || Sbjct 1689813 TTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAA 1689754 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1689753 GATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 1689697 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | |||||||| || ||||| ||||| ||||| || || || Sbjct 1689696 ATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTT 1689637 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 1689636 AACAAAGATTTGCATT 1689621 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || |||| ||| ||||| || ||||| | |||||||| || ||| Sbjct 1690040 TCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAG 1689981 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| |||||| ||||||||||| |||||||| || || || || Sbjct 1689980 ATCAATCTCTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACA 1689924 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | |||||||| || ||||| ||||| ||||| || || || Sbjct 1689923 TTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTA 1689864 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 1689863 ACAAAGATTTGCATT 1689849 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| ||| ||||| || ||||| | |||||||| || || Sbjct 1689585 TTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAA 1689526 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| ||| ||||| |||||||||||| |||||||| || || || || Sbjct 1689525 GATCAATCTCTGCTGA---TCTGGAGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGAC 1689469 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | || || || || ||||| ||||| || || || || || Sbjct 1689468 ATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTTTT 1689409 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 1689408 CACAAAGATTTGCAT 1689394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648989072724