Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq111 114 1e-20 >seq111 Length=4886044 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| ||| | || ||||| || ||||||||||| || | || |||||| | ||||| Sbjct 1690970 CACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 1690911 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1690910 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1690851 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || || || ||||| | || | |||||| Sbjct 1690850 GATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCTT 1690791 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || || ||||||||| Sbjct 1690790 GCCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| || |||||||||||||| | || ||||| | ||||| Sbjct 1689831 CACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTC 1689772 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1689771 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1689712 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || || || ||||| | || | |||||| Sbjct 1689711 GATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTT 1689652 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || || ||||||||| Sbjct 1689651 GCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 111 bits (122), Expect = 2e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || || || || ||||||||||| || | || ||||| | ||||| Sbjct 1690742 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 1690683 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1690682 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1690623 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| || | | || ||| || || |||||||| | || | |||||| Sbjct 1690622 GATCTTGGCCTTGAC-ATTTTCAATGTGTCTGAGGGTTCCACTTCCAGTGTGATGGTCTT 1690564 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || |||||||||||| Sbjct 1690563 GCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| || ||||||||||| || | || |||||| | ||||| Sbjct 1689603 CACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 1689544 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || ||||| ||||||||||| || || Sbjct 1689543 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTG 1689484 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | ||||| | ||||| || | || | |||||| Sbjct 1689483 GATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACCTCAAGTGTGATGGTCTT 1689424 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || | ||||| || || |||||||| Sbjct 1689423 GCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| ||| | || ||||| || ||||||||||| || | || |||||| ||||||| Sbjct 1690287 CACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 1690228 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1690227 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1690168 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | | || ||||| ||| || | || || || || ||||| | || | ||||| Sbjct 1690167 GA-TCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACTTCCAGTGTGATGGTCT 1690109 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || | ||||| || || ||||||||| Sbjct 1690108 TACCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || || || || |||||||||||||| | || ||||| | ||||| Sbjct 1690059 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCATCTTC 1690000 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1689999 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1689940 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || || || ||||| | || | |||||| Sbjct 1689939 GATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTT 1689880 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || || ||||||||| Sbjct 1689879 GCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| || ||||||||||| || | || ||||| | ||||| Sbjct 1690515 CACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 1690456 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1690455 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1690396 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || || || ||||| | || | |||||| Sbjct 1690395 GATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTT 1690336 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || || ||||||||| Sbjct 1690335 GCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 102 bits (112), Expect = 8e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || || || || ||||||||||| || | || ||||| | ||||| Sbjct 1691198 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTC 1691139 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| || |||||| | || | | |||||| || || || ||||||||||| || || Sbjct 1691138 CAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTG 1691079 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| || | || || || || ||||| | || | |||||| Sbjct 1691078 GATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATGGTCTT 1691019 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | ||||| || || ||||||||| Sbjct 1691018 GCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642564089520