Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq111 105 7e-18 seq76 93.3 4e-14 seq71 91.5 1e-13 >seq111 Length=4886044 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | | || ||||| ||||||||||||||| Sbjct 1689620 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1689561 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| || || ||||| Sbjct 1689560 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 1689501 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | ||| | ||| || | | ||||||| Sbjct 1689500 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACC 1689441 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || ||||| || ||||| ||||| || ||||||||| Sbjct 1689440 TCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCATGGCT 1689390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| |||||||| | | | || ||||| ||||||||||||||| Sbjct 1690304 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690245 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || ||||| |||| | |||| | | ||| || || || || Sbjct 1690244 AGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690185 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || ||| | | ||| | ||||| | | || || Sbjct 1690184 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACT 1690125 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| || ||||| ||||| || ||||| Sbjct 1690124 TCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCAT 1690078 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | | |||||||| ||||||||||||||| Sbjct 1691215 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAG 1691156 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| || || || || Sbjct 1691155 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1691096 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 1691095 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1691036 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| ||||| || ||||| Sbjct 1691035 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || ||||| | | | || ||||| ||||||||||||||| Sbjct 1690532 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690473 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| |||| | |||| | | ||| || || || || Sbjct 1690472 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690413 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | ||| | |||||| | | ||| || Sbjct 1690412 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1690353 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| ||||| || ||||| Sbjct 1690352 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1690306 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | | |||||||| ||||||||||| ||| | || || Sbjct 1690064 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCA 1690005 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || ||||| |||| | |||| | | ||| || || || || || ||||||||| Sbjct 1690004 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1689945 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || || | | ||| | |||||| | | ||| || || | || | Sbjct 1689944 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1689885 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| ||||| || ||||| Sbjct 1689884 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 1689850 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || ||||| | | | |||||||| ||||||||||||||| | || || Sbjct 1690747 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1690688 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || ||||| |||| | |||| | | ||| || || || || || ||||||||| Sbjct 1690687 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690628 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || || | || | || | || || ||||| | | ||||| || | || | Sbjct 1690627 TC-CTGGATCTTGGCCTTGACATTTTCAATGTGTCTGAGGGTTCCACTTCCAGTGTGATG 1690569 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || ||||| |||||||| ||||| Sbjct 1690568 GTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 >seq76 Length=1543109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 153291 CCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCG 153350 ||||| || | |||| ||| || || ||||| | ||| | ||||| ||||| ||| | Sbjct 1518536 CCGTCACGCTCAGCCAATTCACAACTGGCCTCTAACGCTGCGTAGTAAATGGTCTCGAAG 1518595 Query 153351 ATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAG 153410 || ||||| || |||| ||||| ||||||||| | || | | || ||| | |||| Sbjct 1518596 ATCTGTTTGTTTAGAAGCTGGGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAG 1518655 Query 153411 GCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATG 153451 ||||||||||| ||||| | || | ||||| || ||||| Sbjct 1518656 GCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATG 1518696 >seq71 Length=3982359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 153291 CCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCG 153350 ||||| || | ||||| ||| || || ||||| | || | ||||| ||||| || | Sbjct 1382584 CCGTCACGCTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAGTAAATGGTCTCAAAG 1382525 Query 153351 ATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAG 153410 || ||||| || |||| ||||| ||||||||| | || | | || ||| | |||| Sbjct 1382524 ATCTGTTTGTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAG 1382465 Query 153411 GCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGT 153459 ||||||||||| ||||| | || | ||||| || ||||| |||||| Sbjct 1382464 GCGTCGGCCAGTCCCTGAACTCCAATACCGATAGGGCGATG--TCTCGT 1382418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260179225760