Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq111 105 6e-18 >seq111 Length=4886044 Score = 105 bits (116), Expect = 6e-18 Identities = 162/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | |||||| | ||| || || || ||||| || || || || ||| Sbjct 1690762 ATTCCTCCACGAAGGCGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG 1690703 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| |||| |||||||| || | ||||||| ||||| || || Sbjct 1690702 GAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGG 1690643 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| || || || || |||| ||| | | |||| || | || Sbjct 1690642 GGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATG-TGTCTGAGGGTTCC 1690584 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || |||||||| || ||||| |||||||||||||| Sbjct 1690583 ACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCAT 1690534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001177285680