Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq76 113 7e-20 seq71 113 7e-20 >seq76 Length=1543109 Score = 113 bits (124), Expect = 7e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| |||| | ||||||| | ||| || | |||||| || || ||||| || Sbjct 1516879 CTTCCAGGCGTAGAAGTGCATGCTTGTCAGCTTTCCATAGTTGGGCTCTGCAATGTGGAT 1516938 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| |||||||| || ||||| ||||| | | ||||| |||||||| ||||| | ||| Sbjct 1516939 GTTAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCACGGT 1516998 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||||| || ||||||||||| |||||| ||| Sbjct 1516999 CTTCTGGGAGATCTCCCACACAGTCTTGTACA 1517030 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| |||||||| |||| ||| | || || | ||||| | ||||||||| || Sbjct 1519507 CTCCACAATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTGGA 1519566 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||||||||||||| |||||||||| |||| |||| | ||| |||| |||| || Sbjct 1519567 CTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGA 1519623 >seq71 Length=3982359 Score = 113 bits (124), Expect = 7e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| |||| | ||||||| | ||| || | |||||| || || ||||| || Sbjct 1384212 CTTCCAGGCGTAGAAGTGCATGCTGGTCAGCTTTCCATAGTTGGGCTCCGCAATGTGGAT 1384153 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGT 204033 ||| |||||||| || ||||| ||||| | | ||||| |||||||| ||||| | ||| Sbjct 1384152 GTTAAGAGACTGACTCTGGTCAATGAATGCTCCTCGATCAGCGGCCATCTTGATCACGGT 1384093 Query 204034 CTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||||| || ||||||||||| |||||| ||| Sbjct 1384092 CTTCTGGGAGATCTCCCACACAGTCTTGTACA 1384061 Score = 89.7 bits (98), Expect = 8e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||||||||||||||| |||| ||| | || || | ||||| | ||||||||| || Sbjct 1381663 CTCCACGATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTTGA 1381604 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||||||||||||| |||||||||| |||| |||| | ||| |||| |||| || Sbjct 1381603 CTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGA 1381547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151641680480