Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq111 127 2e-24 >seq111 Length=4886044 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || ||||| | | ||||||||||| ||| | || |||||| || || ||||| Sbjct 1691222 TTAATTTCCTCCACGAAGACGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTA 1691163 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||| || ||||| | || || ||||| || ||||| || ||||| | |||||| || Sbjct 1691162 GTCGGAGAGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATC 1691103 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | | || |||||| |||||| ||||| | | | ||||| | Sbjct 1691102 TGGGGGGATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGG 1691043 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || |||| |||||||| ||||| || || ||||||||||||||||||||| Sbjct 1691042 CTCTACTTCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690988 Score = 120 bits (132), Expect = 3e-22 Identities = 157/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| ||| | || |||||| || || ||||||||||| || ||||| | Sbjct 1690747 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 1690688 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || ||||| || ||||| | |||||| || | || | | || ||| Sbjct 1690687 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1690628 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | || ||||| | |||||| |||| |||||| Sbjct 1690627 TCCTGGATCTTGGCCTTGA-CATTTTCAATGTGTCTGAGGGTTCCACTTCCAGTGTGATG 1690569 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| || || ||||| ||||| ||||||||| Sbjct 1690568 GTCTTGCCGGTGAGGGTTTTGACAAAAATTTGCATT 1690533 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| ||| | || ||||| || || ||||||||||| Sbjct 1690532 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690473 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || ||||| || ||||| | |||||| || | || Sbjct 1690472 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690413 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| ||||| | | | ||||| | || || Sbjct 1690412 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1690353 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| || || ||||||||||||||||||||| Sbjct 1690352 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1690305 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| ||| | || ||||| || || ||||| ||||| Sbjct 1689848 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAATCGGAG 1689789 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || ||||| || ||||| | |||||| || | || Sbjct 1689788 AGTGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1689729 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| ||||| | | | ||||| | || || Sbjct 1689728 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACT 1689669 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| || || ||||||||||||||||||||| Sbjct 1689668 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689621 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| ||| | || |||||| || || ||||| ||||| || ||||| | Sbjct 1690064 CGCAACACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAGAGTGTGCGGCCA 1690005 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || ||||| || ||||| | |||||| || | || | | || ||| Sbjct 1690004 TCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTG 1689945 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| | || || |||| |||||| Sbjct 1689944 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGAGGGCTCTACTTCCAGTGTGATG 1689885 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| || || ||||||||||||||||||||| Sbjct 1689884 GTCTTGCCGGTGAGGGTTTTAACAAAGATTTGCATT 1689849 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||| | ||| | || ||||| || || ||||||||||| Sbjct 1690987 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690928 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || ||||| || ||||| | |||||| || | || Sbjct 1690927 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690868 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| ||||| | | | ||||| | ||| || Sbjct 1690867 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCTGAGGGTTCTACT 1690808 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| || || ||||| ||||||||||||||| Sbjct 1690807 TCCAGTGTGATGGTCTTGCCGGTGAGGGTTTTGACAAAGATTTGCATT 1690760 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||| | ||| | || ||||| || || ||||||||||| Sbjct 1690304 CCTCCACGAAGACGCAACACTAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1690245 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||| || ||||| || ||||| | |||||| || | || Sbjct 1690244 AGGGTGCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 1690185 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| |||| | | | ||||| | ||| || Sbjct 1690184 ATTCCTTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCTGAGGGTTCTACT 1690125 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || || || ||||| ||||||||||||||| Sbjct 1690124 TCCAGTGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATTTGCATT 1690077 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||||||||| ||| | || ||||| || || ||||||||||| Sbjct 1689620 CCTCCACGAAGACGCAACACCAAATGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGAG 1689561 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||| || ||||| || ||||| | |||||| || | || Sbjct 1689560 AGGGTGCGGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 1689501 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| ||||| | | | || || | ||||| Sbjct 1689500 ATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCTGATGGCTCCACC 1689441 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 1689440 TCAAGTGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 1689394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235870558160